Variant report

Variant	rs7717829
Chromosome Location	chr5:96446395-96446396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96413541..96415661-chr5:96445428..96448359,2	MCF-7	breast:
2	chr5:96440291..96443005-chr5:96446128..96448616,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10039917	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10043135	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10071737	0.97[ASN][1000 genomes]
rs1035507	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11954059	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520374	0.94[ASN][1000 genomes]
rs13167790	0.96[ASN][1000 genomes]
rs182625	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2287903	0.99[ASN][1000 genomes]
rs2544769	0.86[ASN][1000 genomes]
rs2544776	0.84[ASN][1000 genomes]
rs316178	0.97[ASN][1000 genomes]
rs316179	0.88[AMR][1000 genomes]
rs316182	0.90[AMR][1000 genomes]
rs316190	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs316201	0.97[ASN][1000 genomes]
rs316202	0.95[ASN][1000 genomes]
rs316203	0.96[ASN][1000 genomes]
rs316204	0.96[ASN][1000 genomes]
rs316205	0.96[ASN][1000 genomes]
rs316217	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs316218	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs316219	0.96[ASN][1000 genomes]
rs316223	0.84[ASN][1000 genomes]
rs316224	0.85[ASN][1000 genomes]
rs316232	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316233	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316234	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs389536	0.84[ASN][1000 genomes]
rs392723	0.81[ASN][1000 genomes]
rs444243	0.98[ASN][1000 genomes]
rs6556945	0.84[ASN][1000 genomes]
rs7704410	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96435000-96447400	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:96438600-96454800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:96440800-96448600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:96441400-96448600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:96441800-96447200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:96442400-96460200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:96442600-96446600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:96443000-96447200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:96443200-96446400	Weak transcription	Fetal Intestine Small	intestine
10	chr5:96443200-96446600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:96444200-96454000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:96446000-96453800	Weak transcription	Primary B cells from cord blood	blood
13	chr5:96446200-96449000	Enhancers	Fetal Intestine Large	intestine

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