Variant report

Variant	rs7718638
Chromosome Location	chr5:108391221-108391222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7719329	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7729739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108356000-108399000	Weak transcription	HSMM	muscle
2	chr5:108360400-108400400	Weak transcription	NHEK	skin
3	chr5:108360400-108404800	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
5	chr5:108376400-108392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:108377000-108399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:108387600-108395200	Weak transcription	Fetal Stomach	stomach
8	chr5:108387800-108394800	Weak transcription	Left Ventricle	heart
9	chr5:108388000-108396600	Weak transcription	Adipose Nuclei	Adipose
10	chr5:108388000-108401200	Weak transcription	Gastric	stomach
11	chr5:108388200-108391400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:108388200-108391400	Weak transcription	Dnd41	blood
13	chr5:108388200-108391800	Weak transcription	Fetal Muscle Leg	muscle
14	chr5:108388200-108393200	Weak transcription	Pancreas	Pancrea
15	chr5:108388200-108396000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:108388200-108401800	Weak transcription	Ovary	ovary
17	chr5:108388400-108391800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:108388400-108392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:108388800-108396600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:108388800-108397600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:108388800-108412000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:108389000-108396200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:108389800-108392200	Enhancers	Fetal Heart	heart
24	chr5:108390200-108396200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:108390200-108398400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:108390600-108401600	Weak transcription	HSMMtube	muscle
27	chr5:108390800-108396000	Weak transcription	Fetal Lung	lung
28	chr5:108391000-108396000	Weak transcription	NHDF-Ad	bronchial
29	chr5:108391200-108391400	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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