Variant report

Variant	rs7718692
Chromosome Location	chr5:90175446-90175447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90174163..90176497-chr5:90179359..90181555,2	MCF-7	breast:
2	chr5:90175343..90178087-chr5:90180223..90182478,2	MCF-7	breast:
3	chr5:89705562..89707942-chr5:90174788..90176575,2	K562	blood:
4	chr5:90171076..90172753-chr5:90174231..90176185,2	K562	blood:

Variant related genes	Relation type
ENSG00000255647	Chromatin interaction
ENSG00000153140	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58884460	0.96[AFR][1000 genomes]
rs59259750	0.84[EUR][1000 genomes]
rs62374006	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62374009	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882367	chr5:89956991-90209824	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1015449	chr5:89968626-90219398	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90112000-90175800	Weak transcription	Fetal Brain Female	brain
2	chr5:90163600-90194400	Weak transcription	Pancreas	Pancrea
3	chr5:90165400-90188800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:90168200-90186000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:90171600-90177600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:90172600-90179000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:90172600-90184400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:90174000-90177200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:90174200-90175600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:90174400-90176800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:90174600-90185600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:90174800-90183400	Weak transcription	Liver	Liver
13	chr5:90175000-90177400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:90175000-90177800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:90175000-90179000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:90175000-90179000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:90175000-90184400	Weak transcription	K562	blood
18	chr5:90175200-90176400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:90175200-90176800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:90175200-90177000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr5:90175200-90177000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:90175200-90177600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr5:90175200-90177800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:90175200-90181400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:90175200-90182800	Weak transcription	A549	lung

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