Variant report

Variant	rs7719509
Chromosome Location	chr5:94449320-94449321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94445112..94447022-chr5:94447198..94449772,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10476621	0.99[ASN][1000 genomes]
rs1159514	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426094	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1593463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830407	chr5:94447530-94495329	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94448400-94449600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:94448600-94450400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:94448800-94449400	Enhancers	Fetal Heart	heart
4	chr5:94448800-94449600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:94448800-94449600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr5:94448800-94449600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:94448800-94449600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:94448800-94449600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:94448800-94449600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:94448800-94449800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:94448800-94449800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:94448800-94449800	Enhancers	HSMM	muscle
13	chr5:94448800-94449800	Enhancers	HSMMtube	muscle
14	chr5:94448800-94449800	Enhancers	NH-A	brain
15	chr5:94448800-94450000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:94448800-94450200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:94449000-94449400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:94449000-94449600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr5:94449000-94449600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:94449000-94449600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr5:94449000-94449600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:94449000-94449600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:94449000-94449600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:94449000-94449800	Enhancers	Fetal Intestine Large	intestine
25	chr5:94449000-94449800	Enhancers	Stomach Mucosa	stomach
26	chr5:94449000-94450600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:94449200-94450000	Enhancers	Osteobl	bone

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