Variant report

Variant	rs771971
Chromosome Location	chr12:63275412-63275413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63273482..63276105-chr12:63324885..63326810,2	MCF-7	breast:
2	chr12:63255844..63260433-chr12:63273659..63277990,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1666910	0.80[JPT][hapmap]
rs1666911	0.80[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs1695003	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv899161	chr12:63275017-63311148	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63258200-63277200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:63261200-63277800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr12:63262400-63277000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:63262800-63276000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:63263400-63277200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:63267400-63277600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:63268000-63285000	Weak transcription	Fetal Intestine Large	intestine
8	chr12:63268600-63280600	Weak transcription	Brain Anterior Caudate	brain
9	chr12:63271200-63280600	Weak transcription	Left Ventricle	heart
10	chr12:63271400-63287200	Weak transcription	Aorta	Aorta
11	chr12:63271600-63294400	Weak transcription	Ovary	ovary
12	chr12:63271800-63280600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:63273200-63277800	Weak transcription	HepG2	liver
14	chr12:63274200-63275800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr12:63274400-63275800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:63274400-63276000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:63274600-63275600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr12:63274600-63281600	Weak transcription	Brain Angular Gyrus	brain
19	chr12:63274800-63276200	Weak transcription	Brain Hippocampus Middle	brain
20	chr12:63274800-63280600	Weak transcription	Brain Substantia Nigra	brain
21	chr12:63274800-63284000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:63275000-63275600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr12:63275000-63276400	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr12:63275200-63275600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr12:63275200-63275600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:63275400-63275600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr12:63275400-63276400	Enhancers	Pancreas	Pancrea
28	chr12:63275400-63287000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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