Variant report

Variant	rs7720062
Chromosome Location	chr5:92505549-92505550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10428523	0.81[AMR][1000 genomes]
rs11738974	0.81[AMR][1000 genomes]
rs4242240	0.81[AMR][1000 genomes]
rs4242241	0.81[AMR][1000 genomes]
rs4242242	0.81[AMR][1000 genomes]
rs4264926	0.81[AMR][1000 genomes]
rs4266388	0.81[AMR][1000 genomes]
rs4285204	0.81[AMR][1000 genomes]
rs4293897	0.81[AMR][1000 genomes]
rs4302568	0.81[AMR][1000 genomes]
rs4321736	0.81[AMR][1000 genomes]
rs4449514	0.82[AMR][1000 genomes]
rs4551051	0.81[AMR][1000 genomes]
rs4632783	0.81[AMR][1000 genomes]
rs59262698	0.81[AMR][1000 genomes]
rs6557066	0.81[AMR][1000 genomes]
rs67862943	0.81[AMR][1000 genomes]
rs6897863	0.81[AMR][1000 genomes]
rs7700810	0.81[AMR][1000 genomes]
rs7714485	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92500800-92521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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