Variant report

Variant	rs7720684
Chromosome Location	chr5:179710922-179710923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179699592..179702150-chr5:179709663..179711352,2	K562	blood:
2	chr5:179707652..179710961-chr5:179712990..179716242,3	K562	blood:
3	chr5:179701944..179704923-chr5:179710150..179711887,3	MCF-7	breast:
4	chr5:179707659..179712077-chr5:179712622..179717997,8	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55913314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62404890	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62404891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6867398	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs730688	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7708873	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722861	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7720684	MAPK9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179653600-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:179655400-179712600	ZNF genes & repeats	Liver	Liver
3	chr5:179670200-179712800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:179692800-179718000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:179694800-179717600	Weak transcription	HUVEC	blood vessel
6	chr5:179696400-179714800	Weak transcription	Fetal Brain Male	brain
7	chr5:179699000-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:179699800-179711400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr5:179699800-179712600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:179700000-179711600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
11	chr5:179700600-179712600	Strong transcription	Primary T cells from cord blood	blood
12	chr5:179700800-179711400	Strong transcription	Fetal Thymus	thymus
13	chr5:179702400-179714000	Strong transcription	Thymus	Thymus
14	chr5:179702600-179712200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:179703000-179711400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:179703000-179717400	Weak transcription	NHLF	lung
17	chr5:179703400-179714000	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:179703800-179714600	Strong transcription	Dnd41	blood
19	chr5:179704000-179711400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:179704000-179712600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
21	chr5:179704200-179714200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr5:179704400-179711400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr5:179704400-179712400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr5:179704600-179711600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr5:179704600-179712800	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:179704600-179716600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:179704600-179716600	Weak transcription	Psoas Muscle	Psoas
28	chr5:179704600-179716800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr5:179704600-179717200	Weak transcription	Small Intestine	intestine
30	chr5:179704600-179718000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:179705200-179717200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr5:179705600-179717600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:179706200-179712800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:179706400-179712200	Weak transcription	K562	blood
35	chr5:179706600-179712800	Strong transcription	Primary B cells from cord blood	blood
36	chr5:179706600-179717200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr5:179706600-179717200	Weak transcription	Colon Smooth Muscle	Colon
38	chr5:179706800-179718400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr5:179707000-179713800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:179707200-179712000	Strong transcription	A549	lung
41	chr5:179707200-179713600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:179707200-179713800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr5:179707200-179717200	Weak transcription	NHDF-Ad	bronchial
44	chr5:179707400-179717200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr5:179707600-179711400	Strong transcription	Fetal Intestine Small	intestine
46	chr5:179707600-179717600	Weak transcription	Fetal Kidney	kidney
47	chr5:179707800-179713600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr5:179707800-179716400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr5:179708000-179717200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr5:179708200-179712400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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