Variant report

Variant	rs7720852
Chromosome Location	chr5:57284039-57284040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10513133	1.00[AMR][1000 genomes]
rs12654708	0.88[AFR][1000 genomes]
rs1352613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1454912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2898075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4147093	0.88[AFR][1000 genomes]
rs7714203	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1792273	chr5:57214817-57320343	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv10700	chr5:57277483-57313710	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1817904	chr5:57277522-57359476	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1829717	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1830976	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1837615	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1846984	chr5:57277522-57359476	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1850205	chr5:57277522-57359476	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57275000-57284800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:57282800-57285400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:57283000-57284800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:57283000-57285200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:57283200-57284800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57283200-57284800	Weak transcription	Fetal Brain Male	brain
7	chr5:57283200-57284800	Weak transcription	Left Ventricle	heart
8	chr5:57283200-57284800	Weak transcription	HMEC	breast
9	chr5:57283200-57285200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:57283400-57284600	Weak transcription	Fetal Brain Female	brain
11	chr5:57283400-57284600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:57283400-57284600	Weak transcription	A549	lung
13	chr5:57283400-57284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:57283400-57284800	Weak transcription	Osteobl	bone
15	chr5:57283400-57285200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:57283600-57284800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:57283600-57285000	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links