Variant report

Variant	rs7721368
Chromosome Location	chr5:93415241-93415242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17083426	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs17083456	1.00[ASW][hapmap]
rs17083474	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs17083477	1.00[AMR][1000 genomes]
rs6895487	1.00[AMR][1000 genomes]
rs7701468	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93398800-93430800	Weak transcription	Pancreas	Pancrea
2	chr5:93404200-93424000	Weak transcription	Fetal Brain Male	brain
3	chr5:93405200-93421000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:93405400-93416200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:93409000-93421200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:93409400-93429000	Weak transcription	Primary T cells from cord blood	blood
7	chr5:93413000-93415400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:93413000-93416200	Weak transcription	Left Ventricle	heart
9	chr5:93413800-93417800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:93414000-93415600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr5:93414000-93418600	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:93414200-93417600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:93414200-93424800	Weak transcription	Brain Angular Gyrus	brain
14	chr5:93414400-93415800	Weak transcription	Ovary	ovary
15	chr5:93414800-93415400	Enhancers	Fetal Heart	heart
16	chr5:93415200-93416000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:93415200-93419800	Weak transcription	Right Atrium	heart
18	chr5:93415200-93421200	Weak transcription	Aorta	Aorta
19	chr5:93415200-93427200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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