Variant report

Variant	rs7721436
Chromosome Location	chr5:58484336-58484337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:58483761..58484964-chr5:59095567..59096624,7	K562	blood:
2	chr5:58484022..58484971-chr5:58675909..58676491,2	MCF-7	breast:
3	chr5:58484050..58484902-chr5:58792310..58793190,3	MCF-7	breast:
4	chr5:58484203..58484779-chr5:58676055..58676926,3	MCF-7	breast:
5	chr5:58483785..58484780-chr5:58514094..58514743,3	MCF-7	breast:
6	chr5:58483931..58484785-chr5:58663381..58664456,4	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1038079	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2001663	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3815764	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58449800-58489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:58464200-58485400	Weak transcription	Aorta	Aorta
3	chr5:58469200-58484400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:58471000-58484800	Weak transcription	Pancreas	Pancrea
5	chr5:58472000-58484400	Weak transcription	Primary B cells from cord blood	blood
6	chr5:58472200-58485800	Weak transcription	Stomach Mucosa	stomach
7	chr5:58474400-58520000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:58474600-58484400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:58474800-58484400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:58474800-58484800	Weak transcription	Fetal Intestine Small	intestine
11	chr5:58474800-58491000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:58475000-58484400	Weak transcription	Right Ventricle	heart
13	chr5:58475800-58484800	Weak transcription	Fetal Intestine Large	intestine
14	chr5:58478800-58484400	Strong transcription	Hela-S3	cervix
15	chr5:58479800-58484400	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:58479800-58487200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:58479800-58489800	Weak transcription	Gastric	stomach
18	chr5:58480000-58485400	Weak transcription	Left Ventricle	heart
19	chr5:58480200-58488800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:58481000-58486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:58482200-58484600	Weak transcription	Psoas Muscle	Psoas
22	chr5:58482600-58484600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:58483400-58484600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr5:58483600-58484400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:58483600-58484400	Enhancers	HSMMtube	muscle
26	chr5:58483600-58484600	Flanking Active TSS	Fetal Lung	lung
27	chr5:58483600-58484800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:58483600-58484800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:58483600-58484800	Active TSS	NHLF	lung
30	chr5:58483600-58485000	Enhancers	Fetal Brain Female	brain
31	chr5:58483800-58484400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:58483800-58484400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr5:58483800-58484400	Enhancers	NH-A	brain
34	chr5:58483800-58484400	Flanking Active TSS	Osteobl	bone
35	chr5:58483800-58484600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:58483800-58484600	Active TSS	Muscle Satellite Cultured Cells	--
37	chr5:58483800-58484600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr5:58483800-58484600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr5:58483800-58484800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:58483800-58484800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:58483800-58484800	Enhancers	Brain Cingulate Gyrus	brain
42	chr5:58483800-58484800	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr5:58483800-58484800	Enhancers	Fetal Heart	heart
44	chr5:58483800-58485000	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr5:58483800-58485000	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr5:58483800-58485000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr5:58483800-58485000	Active TSS	Stomach Smooth Muscle	stomach
48	chr5:58483800-58486000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr5:58484000-58484400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr5:58484000-58484400	Transcr. at gene 5' and 3'	A549	lung

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