Variant report

Variant	rs772167
Chromosome Location	chr2:97077871-97077872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:97071293..97074013-chr2:97077222..97080195,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1081711	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1081713	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs582014	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs583705	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs585781	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs596069	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs597420	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs605175	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs607302	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs611943	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs618454	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631033	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs631746	0.85[EUR][1000 genomes]
rs654224	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs655101	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs670498	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs674920	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs675239	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676007	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs679414	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs687950	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs772159	0.82[EUR][1000 genomes]
rs772160	0.81[EUR][1000 genomes]
rs772161	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	nsv874679	chr2:96860971-97184160	Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
8	nsv508155	chr2:96934695-97138302	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs772167	ITPRIPL1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97073600-97078400	Weak transcription	Esophagus	oesophagus
2	chr2:97073600-97078400	Weak transcription	Psoas Muscle	Psoas
3	chr2:97073800-97078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:97074400-97078200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:97074400-97079400	Weak transcription	Gastric	stomach
6	chr2:97074800-97078000	Weak transcription	K562	blood
7	chr2:97074800-97078200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:97074800-97078400	Weak transcription	Right Atrium	heart
9	chr2:97075200-97078400	Weak transcription	Colonic Mucosa	Colon
10	chr2:97075200-97078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:97075400-97078800	Weak transcription	Aorta	Aorta
12	chr2:97075600-97078400	Weak transcription	Brain Anterior Caudate	brain
13	chr2:97075600-97079000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:97075600-97079400	Weak transcription	Fetal Kidney	kidney
15	chr2:97075800-97078400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:97075800-97078400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:97075800-97079000	Weak transcription	NH-A	brain
18	chr2:97076000-97078400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:97076000-97078400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:97076000-97078400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:97076000-97078400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:97076000-97078400	Weak transcription	HMEC	breast
23	chr2:97076000-97078600	Weak transcription	Brain Angular Gyrus	brain
24	chr2:97076000-97078600	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:97076000-97078600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr2:97076000-97078600	Weak transcription	Brain Substantia Nigra	brain
27	chr2:97076000-97078600	Weak transcription	Fetal Thymus	thymus
28	chr2:97076000-97078800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:97076000-97078800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr2:97076000-97078800	Weak transcription	Ovary	ovary
31	chr2:97076000-97079200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr2:97076200-97078600	Enhancers	A549	lung
33	chr2:97076200-97079000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:97076200-97079000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:97076400-97078600	Enhancers	Hela-S3	cervix
36	chr2:97076600-97078400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr2:97076800-97078200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr2:97076800-97078400	Bivalent Enhancer	HepG2	liver
39	chr2:97076800-97078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr2:97076800-97079200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr2:97077000-97078000	Weak transcription	Pancreas	Pancrea
42	chr2:97077000-97078000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr2:97077000-97078400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr2:97077000-97078400	Weak transcription	Fetal Intestine Small	intestine
45	chr2:97077200-97078400	Weak transcription	Stomach Mucosa	stomach
46	chr2:97077400-97078200	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr2:97077600-97078000	Weak transcription	Fetal Intestine Large	intestine
48	chr2:97077600-97078400	Weak transcription	Liver	Liver

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