Variant report

Variant	rs7722563
Chromosome Location	chr5:115722387-115722388
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10037895	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10054441	0.82[EUR][1000 genomes]
rs1677415	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs253961	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs27368	0.82[EUR][1000 genomes]
rs6594967	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7701723	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7708765	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9327000	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2763489	chr5:115693166-115733327	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115697600-115748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:115698000-115722800	Weak transcription	Pancreas	Pancrea
3	chr5:115706000-115724400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:115706800-115723200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:115707400-115722600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:115707600-115748400	Weak transcription	Fetal Intestine Large	intestine
7	chr5:115708400-115722400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:115708600-115754000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:115708800-115722400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:115709400-115722800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr5:115711800-115730600	Weak transcription	Gastric	stomach
12	chr5:115712000-115722800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:115714400-115724400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:115714400-115730200	Weak transcription	Right Ventricle	heart
15	chr5:115714600-115724200	Weak transcription	Psoas Muscle	Psoas
16	chr5:115715600-115722800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:115715600-115724400	Weak transcription	Fetal Kidney	kidney
18	chr5:115717800-115724200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:115717800-115724200	Weak transcription	Left Ventricle	heart
20	chr5:115717800-115724200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:115717800-115724400	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:115718200-115723200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:115718200-115724400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:115718200-115724600	Weak transcription	Fetal Brain Female	brain
25	chr5:115718400-115737000	Weak transcription	Primary B cells from cord blood	blood
26	chr5:115718600-115748400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:115718800-115724400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:115718800-115731000	Weak transcription	Spleen	Spleen
29	chr5:115719000-115722800	Weak transcription	Lung	lung
30	chr5:115719000-115724400	Weak transcription	Adipose Nuclei	Adipose
31	chr5:115719000-115724400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr5:115719200-115722800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr5:115719400-115724400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr5:115719400-115734800	Weak transcription	Primary T cells from cord blood	blood
35	chr5:115719600-115728000	Weak transcription	Fetal Intestine Small	intestine
36	chr5:115721800-115722800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr5:115721800-115723000	Enhancers	HUVEC	blood vessel
38	chr5:115722200-115724400	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links