Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10060568	0.92[EUR][1000 genomes]
rs1158196	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12054892	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12653046	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13354637	0.93[EUR][1000 genomes]
rs158986	0.83[AFR][1000 genomes]
rs158988	0.82[AFR][1000 genomes]
rs158991	0.82[AFR][1000 genomes]
rs158992	0.84[AFR][1000 genomes]
rs158994	0.84[AFR][1000 genomes]
rs158995	0.82[AFR][1000 genomes]
rs158998	0.84[AFR][1000 genomes]
rs159001	0.84[AFR][1000 genomes]
rs159009	0.82[AFR][1000 genomes]
rs1833611	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2279980	0.86[EUR][1000 genomes]
rs2591923	0.83[AFR][1000 genomes]
rs2662624	0.83[AFR][1000 genomes]
rs293016	0.81[AFR][1000 genomes]
rs293017	0.81[AFR][1000 genomes]
rs293024	0.82[AFR][1000 genomes]
rs58662773	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59064450	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6898044	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72760264	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57995800-57999200	Weak transcription	Liver	Liver
2	chr5:57995800-58002800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:57997400-57997800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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