Variant report

Variant	rs77246593
Chromosome Location	chr15:52028018-52028019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
2	chr15:51950953..51953753-chr15:52026333..52028408,2	MCF-7	breast:
3	chr15:52026672..52029372-chr15:52056834..52058990,2	MCF-7	breast:
4	chr15:52026416..52029376-chr15:52033345..52036135,2	K562	blood:
5	chr15:51911576..51916583-chr15:52027382..52031699,5	MCF-7	breast:
6	chr15:51941822..51942724-chr15:52027267..52028353,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104093	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52013600-52028200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:52013600-52028400	Weak transcription	Fetal Brain Female	brain
3	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:52019000-52028200	Weak transcription	Brain Substantia Nigra	brain
5	chr15:52020000-52028800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:52020200-52029000	Weak transcription	NH-A	brain
7	chr15:52023600-52028200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:52024200-52028400	Flanking Active TSS	GM12878-XiMat	blood
9	chr15:52024400-52028400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:52024400-52028400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:52024400-52028400	Enhancers	Fetal Thymus	thymus
12	chr15:52024400-52028400	Enhancers	Thymus	Thymus
13	chr15:52024400-52028800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:52024400-52028800	Weak transcription	Right Ventricle	heart
15	chr15:52024600-52028200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr15:52024600-52028200	Weak transcription	NHDF-Ad	bronchial
17	chr15:52024600-52028200	Weak transcription	NHLF	lung
18	chr15:52024600-52028400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:52024600-52028400	Weak transcription	Aorta	Aorta
20	chr15:52024600-52028400	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:52024600-52028400	Weak transcription	Gastric	stomach
22	chr15:52024600-52028400	Weak transcription	NHEK	skin
23	chr15:52024600-52028600	Weak transcription	Fetal Stomach	stomach
24	chr15:52024600-52028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:52024600-52028800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:52024600-52028800	Weak transcription	Osteobl	bone
27	chr15:52024600-52029000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:52024800-52028200	Weak transcription	Adipose Nuclei	Adipose
29	chr15:52024800-52028400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:52024800-52028400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:52024800-52028400	Weak transcription	Fetal Intestine Large	intestine
32	chr15:52024800-52028400	Weak transcription	Placenta	Placenta
33	chr15:52024800-52028400	Weak transcription	Stomach Mucosa	stomach
34	chr15:52025000-52028200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:52025000-52028200	Weak transcription	Brain Angular Gyrus	brain
36	chr15:52025000-52028400	Weak transcription	Colonic Mucosa	Colon
37	chr15:52025000-52028400	Weak transcription	Pancreas	Pancrea
38	chr15:52025000-52028400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:52025000-52028400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:52025000-52028600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:52025000-52028800	Weak transcription	Left Ventricle	heart
42	chr15:52025200-52028400	Weak transcription	Right Atrium	heart
43	chr15:52025200-52028800	Weak transcription	HSMMtube	muscle
44	chr15:52025400-52029000	Weak transcription	Esophagus	oesophagus
45	chr15:52026400-52028200	Enhancers	Brain Cingulate Gyrus	brain
46	chr15:52026400-52029400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:52026600-52028600	Enhancers	K562	blood
48	chr15:52026800-52028400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:52026800-52028800	Weak transcription	Psoas Muscle	Psoas
50	chr15:52026800-52029000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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