Variant report

Variant	rs7724870
Chromosome Location	chr5:35696892-35696893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10042685	1.00[AMR][1000 genomes]
rs57996618	1.00[AMR][1000 genomes]
rs58849186	1.00[AMR][1000 genomes]
rs60410002	1.00[AMR][1000 genomes]
rs7716573	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7725710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7726001	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7731950	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737020	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
2	chr5:35672000-35708600	Weak transcription	Gastric	stomach
3	chr5:35680000-35698600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr5:35681000-35707600	Weak transcription	Primary T cells from cord blood	blood
5	chr5:35684600-35708600	Weak transcription	Fetal Kidney	kidney
6	chr5:35684800-35703600	Weak transcription	Fetal Intestine Small	intestine
7	chr5:35686200-35709600	Weak transcription	Fetal Lung	lung
8	chr5:35691600-35702400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr5:35691800-35704000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:35693400-35698200	Weak transcription	Aorta	Aorta
11	chr5:35693400-35698800	Weak transcription	Lung	lung
12	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
13	chr5:35695000-35711000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:35695200-35703000	Weak transcription	Brain Angular Gyrus	brain
15	chr5:35696600-35699000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr5:35696600-35699400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr5:35696800-35697000	Enhancers	Fetal Muscle Trunk	muscle
18	chr5:35696800-35697000	Enhancers	Left Ventricle	heart
19	chr5:35696800-35697200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:35696800-35697200	Enhancers	Brain Hippocampus Middle	brain
21	chr5:35696800-35697200	Enhancers	Right Ventricle	heart
22	chr5:35696800-35697400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr5:35696800-35697600	Enhancers	Primary hematopoietic stem cells	blood
24	chr5:35696800-35697600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:35696800-35697600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:35696800-35697600	Enhancers	Adipose Nuclei	Adipose
27	chr5:35696800-35697600	Enhancers	Fetal Heart	heart
28	chr5:35696800-35697600	Enhancers	Fetal Muscle Leg	muscle
29	chr5:35696800-35697600	Enhancers	Right Atrium	heart
30	chr5:35696800-35697600	Enhancers	Spleen	Spleen
31	chr5:35696800-35697800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:35696800-35697800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:35696800-35699400	Enhancers	Primary monocytes fromperipheralblood	blood

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