Variant report

Variant	rs77250598
Chromosome Location	chr2:11180810-11180811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11180000-11181200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:11180200-11181000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:11180200-11181200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:11180200-11181800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:11180600-11181000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:11180600-11181000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:11180600-11181200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:11180800-11181400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:11180800-11181400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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