Variant report

Variant	rs77253701
Chromosome Location	chr10:6169402-6169403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6164842..6170645-chr10:6170879..6175262,7	K562	blood:
2	chr10:6168583..6171186-chr10:6243382..6246451,4	MCF-7	breast:
3	chr10:6167871..6170657-chr10:6186915..6188419,2	MCF-7	breast:
4	chr10:6168287..6170696-chr10:6258777..6261462,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL2RA-2	chr10:6169367-6169553	ENSG00000232547.1

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	esv2227403	chr10:6169304-6169790	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3485779	chr10:6169332-6169723	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3485777	chr10:6169355-6169708	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3485776	chr10:6169369-6169709	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3462840	chr10:6169370-6169723	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3462618	chr10:6169388-6169703	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv4595	chr10:6169398-6169806	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6157000-6170800	Weak transcription	Gastric	stomach
2	chr10:6157600-6170400	Weak transcription	Lung	lung
3	chr10:6157600-6170400	Weak transcription	Thymus	Thymus
4	chr10:6157600-6171000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:6157600-6172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:6157800-6170800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:6158600-6170200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:6158600-6170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:6159000-6170400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr10:6159000-6170800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:6159200-6170400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:6159200-6170400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:6159200-6170400	Weak transcription	NH-A	brain
14	chr10:6159200-6170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:6159200-6170600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:6159200-6170600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:6159400-6170200	Weak transcription	Primary T cells from cord blood	blood
18	chr10:6159400-6172000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:6160000-6170200	Weak transcription	Fetal Thymus	thymus
20	chr10:6161800-6170200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:6161800-6170400	Weak transcription	Left Ventricle	heart
22	chr10:6162600-6170200	Weak transcription	Right Ventricle	heart
23	chr10:6163000-6170400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:6163000-6170400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:6163000-6171200	Weak transcription	Esophagus	oesophagus
26	chr10:6163200-6170200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:6163200-6170200	Weak transcription	NHLF	lung
28	chr10:6165800-6170600	Weak transcription	HSMMtube	muscle
29	chr10:6166200-6170200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:6167000-6169800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:6167000-6170000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:6167000-6170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:6167000-6170400	Weak transcription	Right Atrium	heart
34	chr10:6167000-6170400	Weak transcription	NHDF-Ad	bronchial
35	chr10:6167000-6170400	Weak transcription	NHEK	skin
36	chr10:6167000-6171000	Weak transcription	HUVEC	blood vessel
37	chr10:6167000-6172000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:6167200-6170200	Weak transcription	Brain Substantia Nigra	brain
39	chr10:6167200-6170200	Weak transcription	Fetal Heart	heart
40	chr10:6167200-6170200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:6167200-6170400	Weak transcription	K562	blood
42	chr10:6167400-6169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:6167400-6170200	Weak transcription	Adipose Nuclei	Adipose
44	chr10:6167400-6170200	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:6167400-6170600	Weak transcription	Brain Anterior Caudate	brain
46	chr10:6167600-6170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:6167600-6170400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr10:6167600-6170800	Enhancers	Ovary	ovary
49	chr10:6167600-6172200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:6167600-6174800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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