Variant report

Variant	rs7726765
Chromosome Location	chr5:112054913-112054914
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112053751..112055842-chr5:112072998..112075540,2	K562	blood:
2	chr5:112053504..112055952-chr5:112056185..112057959,2	MCF-7	breast:
3	chr5:112050398..112055694-chr5:112065977..112068837,5	K562	blood:
4	chr5:112053751..112057397-chr5:112071808..112074498,3	K562	blood:

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17360289	1.00[AFR][1000 genomes]
rs2229997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56320268	1.00[AFR][1000 genomes]
rs6862066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6867909	1.00[AMR][1000 genomes]
rs6879416	1.00[AFR][1000 genomes]
rs7700326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704566	1.00[AFR][1000 genomes]
rs7718840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv462387	chr5:112053911-112124369	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv599393	chr5:112053911-112124369	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112044800-112058000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:112044800-112058800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:112045400-112062000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:112045600-112060200	Weak transcription	NHLF	lung
5	chr5:112045600-112061600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:112045600-112063600	Weak transcription	Ovary	ovary
7	chr5:112046000-112069200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:112047000-112060400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:112047000-112061600	Weak transcription	Aorta	Aorta
10	chr5:112047000-112066000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:112047400-112056200	Weak transcription	Dnd41	blood
12	chr5:112047400-112058600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr5:112047400-112060400	Weak transcription	Fetal Intestine Large	intestine
14	chr5:112047400-112072400	Weak transcription	Thymus	Thymus
15	chr5:112047600-112061600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr5:112048200-112058200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:112048400-112061200	Weak transcription	Fetal Intestine Small	intestine
18	chr5:112049200-112061600	Weak transcription	Fetal Stomach	stomach
19	chr5:112049600-112055800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr5:112049600-112060400	Weak transcription	Lung	lung
21	chr5:112050200-112056200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr5:112050800-112056200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr5:112051000-112056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:112051200-112058600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr5:112052000-112072600	Weak transcription	Primary B cells from cord blood	blood
26	chr5:112052600-112072600	Weak transcription	Primary T cells from cord blood	blood
27	chr5:112052800-112055800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr5:112053400-112055000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr5:112053800-112055000	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr5:112054000-112055000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr5:112054000-112056400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:112054200-112055000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr5:112054200-112055800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr5:112054400-112056000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr5:112054400-112056200	Weak transcription	GM12878-XiMat	blood
36	chr5:112054400-112057400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:112054400-112058200	Weak transcription	Psoas Muscle	Psoas
38	chr5:112054400-112058400	Weak transcription	Left Ventricle	heart
39	chr5:112054400-112060600	Weak transcription	Small Intestine	intestine
40	chr5:112054400-112062200	Weak transcription	Right Ventricle	heart
41	chr5:112054400-112073200	Weak transcription	Pancreas	Pancrea
42	chr5:112054600-112055800	Weak transcription	Brain Angular Gyrus	brain
43	chr5:112054600-112055800	Weak transcription	Brain Hippocampus Middle	brain
44	chr5:112054600-112056200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:112054600-112056200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr5:112054600-112057200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr5:112054600-112057200	Weak transcription	Brain Substantia Nigra	brain
48	chr5:112054600-112061400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr5:112054800-112055000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:112054800-112055000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links