Variant report

Variant	rs7727000
Chromosome Location	chr5:9254291-9254292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:9250420..9251966-chr5:9252760..9255699,2	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10037736	1.00[AMR][1000 genomes]
rs10037901	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10038331	1.00[EUR][1000 genomes]
rs10051740	1.00[AMR][1000 genomes]
rs10062136	1.00[EUR][1000 genomes]
rs10064043	1.00[EUR][1000 genomes]
rs10071937	1.00[AMR][1000 genomes]
rs10075425	1.00[AMR][1000 genomes]
rs10474843	1.00[AMR][1000 genomes]
rs10475461	1.00[EUR][1000 genomes]
rs11956954	1.00[EUR][1000 genomes]
rs13360017	1.00[EUR][1000 genomes]
rs13360301	1.00[EUR][1000 genomes]
rs1806025	1.00[EUR][1000 genomes]
rs1806026	1.00[EUR][1000 genomes]
rs1806028	1.00[EUR][1000 genomes]
rs1806029	1.00[EUR][1000 genomes]
rs1806030	1.00[EUR][1000 genomes]
rs1806031	1.00[EUR][1000 genomes]
rs1806035	1.00[EUR][1000 genomes]
rs1806037	1.00[EUR][1000 genomes]
rs1806038	1.00[AMR][1000 genomes]
rs1806039	1.00[EUR][1000 genomes]
rs1806040	1.00[EUR][1000 genomes]
rs1806041	1.00[EUR][1000 genomes]
rs1806043	1.00[EUR][1000 genomes]
rs1806044	1.00[EUR][1000 genomes]
rs1806045	1.00[EUR][1000 genomes]
rs1806048	1.00[EUR][1000 genomes]
rs1806054	1.00[AMR][1000 genomes]
rs1806059	1.00[AMR][1000 genomes]
rs1806068	1.00[EUR][1000 genomes]
rs2387815	1.00[EUR][1000 genomes]
rs28405269	1.00[EUR][1000 genomes]
rs28421167	1.00[AMR][1000 genomes]
rs28435264	1.00[EUR][1000 genomes]
rs28670316	1.00[AMR][1000 genomes]
rs28795500	1.00[EUR][1000 genomes]
rs3026325	1.00[EUR][1000 genomes]
rs3026329	1.00[EUR][1000 genomes]
rs3026330	1.00[EUR][1000 genomes]
rs3026331	1.00[AMR][1000 genomes]
rs3026332	1.00[EUR][1000 genomes]
rs3026333	1.00[AMR][1000 genomes]
rs3026334	1.00[EUR][1000 genomes]
rs3846581	1.00[EUR][1000 genomes]
rs3892835	1.00[EUR][1000 genomes]
rs56698989	1.00[EUR][1000 genomes]
rs59081292	1.00[EUR][1000 genomes]
rs6874269	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6885837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73046643	1.00[EUR][1000 genomes]
rs73046646	1.00[EUR][1000 genomes]
rs7708290	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7711705	1.00[AMR][1000 genomes]
rs7714286	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7715505	1.00[AMR][1000 genomes]
rs7721539	1.00[EUR][1000 genomes]
rs7726447	1.00[AMR][1000 genomes]
rs7727842	1.00[AMR][1000 genomes]
rs7735941	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs877189	1.00[EUR][1000 genomes]
rs877190	1.00[EUR][1000 genomes]
rs886506	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881438	chr5:8728874-9695667	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1016937	chr5:8824417-9402871	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv537638	chr5:8824417-9402871	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv918004	chr5:8824417-9402871	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1015378	chr5:9053542-9617963	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv537640	chr5:9053542-9617963	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv830200	chr5:9081023-9269495	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv597070	chr5:9100211-9280338	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1020815	chr5:9135207-9425649	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv498044	chr5:9143754-9402870	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv530183	chr5:9146506-9413373	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv597071	chr5:9182376-9760599	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv1032672	chr5:9182409-9843893	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv1035075	chr5:9182584-9843723	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
15	nsv537641	chr5:9182584-9843723	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
16	nsv1034637	chr5:9182784-9741743	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv537642	chr5:9182784-9741743	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1028656	chr5:9196001-9837040	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
19	nsv1016885	chr5:9218932-9575594	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv1026078	chr5:9222811-9591290	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv1022137	chr5:9225121-9745434	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
22	nsv537643	chr5:9225121-9745434	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
23	nsv4708	chr5:9245266-9290172	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:9185400-9264600	Weak transcription	Left Ventricle	heart
2	chr5:9225200-9258600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:9234800-9263400	Weak transcription	Fetal Heart	heart
4	chr5:9238400-9254400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:9243400-9265400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:9245000-9264600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:9245200-9265200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:9250000-9274200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:9250200-9265200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:9250400-9264600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:9251600-9254400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:9252200-9255400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:9252200-9265200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:9252400-9254400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:9252600-9254400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:9253200-9265400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:9253200-9265800	Weak transcription	Esophagus	oesophagus

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