Variant report

Variant	rs7727286
Chromosome Location	chr5:147215193-147215194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr5:147214701-147215669	MCF-7	breast:	n/a	n/a
2	FOSL2	chr5:147214762-147215497	MCF-7	breast:	n/a	n/a
3	REST	chr5:147214786-147215517	A549	lung:	n/a	n/a
4	EP300	chr5:147214731-147215485	A549	lung:	n/a	chr5:147215055-147215065 chr5:147215086-147215100
5	HNF4A	chr5:147214924-147215338	HepG2	liver:	n/a	n/a
6	NR2F2	chr5:147214784-147215590	MCF-7	breast:	n/a	n/a
7	MBD4	chr5:147214711-147215448	HepG2	liver:	n/a	n/a
8	GATA3	chr5:147214621-147215548	A549	lung:	n/a	n/a
9	TEAD4	chr5:147214845-147215371	HepG2	liver:	n/a	n/a
10	MYC	chr5:147214959-147215252	MCF10A-Er-Src	breast:	n/a	n/a
11	SIX5	chr5:147214916-147215252	A549	lung:	n/a	n/a
12	GABPA	chr5:147214855-147215430	MCF-7	breast:	n/a	n/a
13	CREB1	chr5:147214812-147215415	HepG2	liver:	n/a	n/a
14	RXRA	chr5:147214859-147215411	HepG2	liver:	n/a	n/a
15	GATA3	chr5:147214644-147215647	MCF-7	breast:	n/a	n/a
16	CEBPB	chr5:147214918-147215286	HepG2	liver:	n/a	chr5:147215060-147215073 chr5:147215060-147215071
17	ZBTB33	chr5:147214833-147215378	A549	lung:	n/a	n/a
18	EP300	chr5:147214812-147215392	HepG2	liver:	n/a	chr5:147215055-147215065 chr5:147215086-147215100
19	NFIC	chr5:147214710-147215459	HepG2	liver:	n/a	n/a
20	SP1	chr5:147214663-147215464	A549	lung:	n/a	chr5:147214703-147214710
21	FOSL2	chr5:147214838-147215324	A549	lung:	n/a	n/a
22	TCF12	chr5:147214824-147215439	A549	lung:	n/a	n/a
23	TEAD4	chr5:147214921-147215404	A549	lung:	n/a	n/a
24	GABPA	chr5:147214906-147215418	MCF-7	breast:	n/a	n/a
25	FOXA1	chr5:147214655-147215592	HepG2	liver:	n/a	chr5:147214831-147214843 chr5:147215069-147215084 chr5:147215050-147215065
26	GATA3	chr5:147214825-147215347	T-47D	breast:	n/a	n/a
27	JUND	chr5:147214932-147215201	HepG2	liver:	n/a	chr5:147215036-147215047
28	FOS	chr5:147214891-147215309	MCF10A-Er-Src	breast:	n/a	n/a
29	JUND	chr5:147214804-147215448	MCF-7	breast:	n/a	chr5:147215036-147215047
30	MYBL2	chr5:147214707-147215483	HepG2	liver:	n/a	n/a
31	JUN	chr5:147214876-147215299	Hela-S3	cervix:	n/a	n/a
32	NFIC	chr5:147214834-147215389	HepG2	liver:	n/a	n/a
33	SRF	chr5:147214947-147215277	HepG2	liver:	n/a	n/a
34	MAFK	chr5:147214895-147215206	HepG2	liver:	n/a	n/a
35	FOXA2	chr5:147213569-147216540	HepG2	liver:	n/a	chr5:147214831-147214843
36	MAX	chr5:147214821-147215405	HepG2	liver:	n/a	n/a
37	REST	chr5:147214953-147215286	HepG2	liver:	n/a	n/a
38	SIN3AK20	chr5:147214796-147215559	MCF-7	breast:	n/a	n/a
39	FOXA1	chr5:147214724-147215429	HepG2	liver:	n/a	chr5:147214831-147214843 chr5:147215069-147215084 chr5:147215050-147215065
40	FOXA1	chr5:147214660-147215516	HepG2	liver:	n/a	chr5:147214831-147214843 chr5:147215069-147215084 chr5:147215050-147215065
41	TCF12	chr5:147214531-147215758	A549	lung:	n/a	n/a
42	ZNF217	chr5:147214788-147215446	MCF-7	breast:	n/a	n/a
43	MAX	chr5:147214971-147215249	HepG2	liver:	n/a	n/a
44	TEAD4	chr5:147214755-147215519	A549	lung:	n/a	n/a
45	STAT3	chr5:147214913-147215268	MCF10A-Er-Src	breast:	n/a	chr5:147215062-147215070
46	CEBPB	chr5:147214909-147215303	HepG2	liver:	n/a	chr5:147215060-147215073 chr5:147215060-147215071
47	FOS	chr5:147214854-147215358	MCF10A-Er-Src	breast:	n/a	n/a
48	TCF12	chr5:147214802-147215404	MCF-7	breast:	n/a	n/a
49	EP300	chr5:147214859-147215315	HepG2	liver:	n/a	chr5:147215055-147215065 chr5:147215086-147215100
50	MAZ	chr5:147214906-147215315	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SPINK1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7705272	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv933308	chr5:147173804-147269006	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147209200-147218400	Weak transcription	Gastric	stomach
2	chr5:147210400-147218800	Weak transcription	Small Intestine	intestine
3	chr5:147211600-147217800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:147211600-147219000	Enhancers	Fetal Intestine Large	intestine
5	chr5:147211800-147217000	Weak transcription	Pancreas	Pancrea
6	chr5:147213400-147217000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr5:147213600-147216600	Weak transcription	Stomach Mucosa	stomach
8	chr5:147214200-147219000	Enhancers	HepG2	liver
9	chr5:147214400-147216000	Enhancers	A549	lung
10	chr5:147214400-147218000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:147214600-147215400	Enhancers	Hela-S3	cervix
12	chr5:147214600-147217600	Enhancers	Fetal Intestine Small	intestine
13	chr5:147214600-147218600	Enhancers	Liver	Liver
14	chr5:147214800-147218600	Enhancers	Duodenum Mucosa	Duodenum

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