Variant report

Variant	rs7727755
Chromosome Location	chr5:117084701-117084702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10064221	0.84[EUR][1000 genomes]
rs11241431	0.81[EUR][1000 genomes]
rs4244392	0.90[EUR][1000 genomes]
rs4244394	0.90[EUR][1000 genomes]
rs4244395	0.81[EUR][1000 genomes]
rs4304103	0.95[EUR][1000 genomes]
rs4437413	0.96[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs4920988	0.92[EUR][1000 genomes]
rs6595051	0.91[EUR][1000 genomes]
rs6863742	0.81[GIH][hapmap]
rs7445723	0.87[EUR][1000 genomes]
rs7727315	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599489	chr5:117042759-117120444	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7727755	CCDC112	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117083800-117085200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:117083800-117085600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:117084000-117085000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:117084000-117085200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:117084400-117084800	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr5:117084400-117085200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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