Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10038508	0.81[EUR][1000 genomes]
rs1120946	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1505850	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1596055	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1661037	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16869794	0.83[EUR][1000 genomes]
rs16869799	0.84[EUR][1000 genomes]
rs16876880	0.81[EUR][1000 genomes]
rs1847836	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs231383	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2919809	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs332522	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs332523	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6864520	0.83[EUR][1000 genomes]
rs6865573	0.81[EUR][1000 genomes]
rs6869618	0.84[EUR][1000 genomes]
rs72771538	0.83[EUR][1000 genomes]
rs7723015	0.82[EUR][1000 genomes]
rs7724031	0.81[EUR][1000 genomes]
rs9986249	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034732	chr5:90834465-90925707	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7729308	C5orf36	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90909800-90914000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:90913800-90914600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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