Variant report

Variant	rs7729558
Chromosome Location	chr5:89392204-89392205
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89387870..89390195-chr5:89390248..89392767,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16868203	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868210	0.83[AMR][1000 genomes]
rs17316215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708560	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	esv1803563	chr5:89385773-89395840	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89388800-89393200	Enhancers	NHEK	skin
2	chr5:89389400-89392800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr5:89389400-89392800	Enhancers	HMEC	breast
4	chr5:89390600-89394600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:89391000-89392600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:89391200-89393400	Enhancers	NH-A	brain
7	chr5:89391400-89392400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:89391600-89393000	Enhancers	Hela-S3	cervix
9	chr5:89392000-89392800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:89392200-89392600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:89392200-89392600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:89392200-89392600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:89392200-89392600	Enhancers	HSMMtube	muscle
14	chr5:89392200-89392800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:89392200-89392800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:89392200-89393000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:89392200-89393000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:89392200-89393000	Enhancers	Fetal Heart	heart
19	chr5:89392200-89393000	Enhancers	Stomach Mucosa	stomach
20	chr5:89392200-89393000	Enhancers	A549	lung
21	chr5:89392200-89393000	Enhancers	Osteobl	bone
22	chr5:89392200-89393200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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