Variant report

Variant	rs77307742
Chromosome Location	chr18:13276628-13276629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr18:13276462-13276640	ProgFib	skin:	n/a	n/a

Variant related genes	Relation type
LDLRAD4	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv2209	chr18:13276410-13316570	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13243600-13278200	Weak transcription	Dnd41	blood
2	chr18:13259200-13280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:13261200-13282200	Weak transcription	Small Intestine	intestine
4	chr18:13268400-13276800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:13269400-13280000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:13270000-13276800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr18:13270000-13279200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:13270000-13279800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr18:13270000-13283800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr18:13270000-13290000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:13270200-13278400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr18:13270200-13284600	Weak transcription	Psoas Muscle	Psoas
13	chr18:13270200-13288200	Weak transcription	Fetal Intestine Large	intestine
14	chr18:13270200-13290200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr18:13270200-13297600	Weak transcription	Colonic Mucosa	Colon
16	chr18:13270400-13279600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr18:13270800-13279000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr18:13270800-13279800	Weak transcription	Adipose Nuclei	Adipose
19	chr18:13270800-13282600	Weak transcription	Fetal Intestine Small	intestine
20	chr18:13271400-13281600	Weak transcription	Brain Germinal Matrix	brain
21	chr18:13271800-13278600	Weak transcription	Liver	Liver
22	chr18:13272800-13284800	Weak transcription	Esophagus	oesophagus
23	chr18:13272800-13289600	Weak transcription	Gastric	stomach
24	chr18:13273200-13283800	Weak transcription	Spleen	Spleen
25	chr18:13274000-13279000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr18:13274200-13279000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr18:13274400-13277200	Weak transcription	Pancreas	Pancrea
28	chr18:13274400-13277400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr18:13274400-13277800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr18:13274400-13278000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr18:13274400-13278400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr18:13274400-13279000	Weak transcription	Fetal Kidney	kidney
33	chr18:13274400-13279200	Enhancers	Primary T cells from cord blood	blood
34	chr18:13274600-13278800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr18:13274600-13278800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr18:13274600-13282400	Weak transcription	HepG2	liver
37	chr18:13274600-13284000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr18:13274600-13284200	Weak transcription	Colon Smooth Muscle	Colon
39	chr18:13274600-13301600	Weak transcription	Brain Substantia Nigra	brain
40	chr18:13274600-13302400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr18:13275800-13276800	Enhancers	Fetal Thymus	thymus
42	chr18:13275800-13277000	Enhancers	Thymus	Thymus
43	chr18:13275800-13278800	Weak transcription	Primary B cells from cord blood	blood
44	chr18:13276000-13280200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr18:13276200-13276800	Enhancers	Brain Angular Gyrus	brain
46	chr18:13276200-13277600	Enhancers	Fetal Heart	heart
47	chr18:13276200-13277600	Enhancers	Right Atrium	heart
48	chr18:13276200-13277800	Enhancers	Left Ventricle	heart
49	chr18:13276200-13279200	Enhancers	Brain Anterior Caudate	brain
50	chr18:13276400-13276800	Flanking Active TSS	Primary T cells fromperipheralblood	blood

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