Variant report

Variant	rs7732837
Chromosome Location	chr5:89903392-89903393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:89900245..89902488-chr5:89903253..89905685,5	K562	blood:
2	chr5:89902314..89904389-chr5:89906199..89907994,3	K562	blood:
3	chr5:89769479..89771079-chr5:89902618..89904639,2	MCF-7	breast:
4	chr5:89895280..89897883-chr5:89902779..89905388,2	K562	blood:
5	chr5:89767614..89772956-chr5:89898929..89905987,8	K562	blood:
6	chr5:89782175..89784403-chr5:89901956..89904362,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113356	Chromatin interaction
ENSG00000176055	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11948077	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs11953174	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11954050	1.00[EUR][1000 genomes]
rs11954191	1.00[EUR][1000 genomes]
rs11954754	1.00[EUR][1000 genomes]
rs11955985	1.00[EUR][1000 genomes]
rs11956324	1.00[EUR][1000 genomes]
rs11957754	1.00[EUR][1000 genomes]
rs11959499	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11960459	1.00[EUR][1000 genomes]
rs13356310	1.00[CHD][hapmap]
rs1394639	1.00[TSI][hapmap]
rs16868974	1.00[ASW][hapmap]
rs16869036	1.00[EUR][1000 genomes]
rs16869039	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs16869046	1.00[ASW][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs16869069	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs16869072	1.00[ASW][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs16869075	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs16869076	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs16869091	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs2090594	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs41311331	1.00[EUR][1000 genomes]
rs57985920	1.00[EUR][1000 genomes]
rs62000408	1.00[EUR][1000 genomes]
rs6452897	1.00[EUR][1000 genomes]
rs6452909	1.00[EUR][1000 genomes]
rs6861393	1.00[EUR][1000 genomes]
rs6868367	1.00[EUR][1000 genomes]
rs6868595	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs6879160	1.00[EUR][1000 genomes]
rs6880756	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs6886689	1.00[EUR][1000 genomes]
rs6891482	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs73179739	1.00[EUR][1000 genomes]
rs7706469	1.00[ASW][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs7706731	1.00[EUR][1000 genomes]
rs7718860	1.00[EUR][1000 genomes]
rs7720923	1.00[EUR][1000 genomes]
rs7721378	1.00[ASW][hapmap];1.00[CHD][hapmap]
rs7730198	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7733280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89892800-89909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:89893000-89907800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:89895000-89907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:89901000-89908200	Weak transcription	GM12878-XiMat	blood
5	chr5:89902000-89903400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:89902600-89917400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:89903200-89908400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links