Variant report

Variant	rs7732958
Chromosome Location	chr5:74570999-74571000
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74569658..74571671-chr5:74631055..74633610,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247372	Chromatin interaction
ENSG00000113161	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1009417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654238	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12659206	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12659221	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12660028	0.86[EUR][1000 genomes]
rs1423526	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17671549	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17739025	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2241402	1.00[CEU][hapmap]
rs2303151	1.00[CEU][hapmap]
rs4072112	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4703662	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703663	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4703664	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703666	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4704199	1.00[ASN][1000 genomes]
rs4704203	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4704205	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4704209	1.00[CEU][hapmap]
rs57528678	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6870787	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6872197	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6877840	0.86[EUR][1000 genomes]
rs7700484	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7700655	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7710120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712085	0.84[ASN][1000 genomes]
rs7717396	1.00[CEU][hapmap]
rs7719376	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731499	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7731875	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7737008	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74568400-74579400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:74569200-74573200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:74570400-74571000	Enhancers	Liver	Liver
4	chr5:74570400-74571200	Enhancers	HepG2	liver
5	chr5:74570400-74576200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr5:74570600-74571400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:74570600-74571400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:74570600-74571400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:74570600-74572000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:74570600-74573600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:74570800-74571000	Enhancers	Duodenum Mucosa	Duodenum
12	chr5:74570800-74571000	Enhancers	Fetal Intestine Large	intestine
13	chr5:74570800-74571000	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr5:74570800-74571400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr5:74570800-74571400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:74570800-74571600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:74570800-74572800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:74570800-74572800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:74570800-74573600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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