Variant report

Variant	rs7732976
Chromosome Location	chr5:40890367-40890368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:40797441..40799812-chr5:40889313..40890816,2	MCF-7	breast:
2	chr5:40877064..40878620-chr5:40889249..40891456,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132356	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10035225	0.82[AMR][1000 genomes]
rs10035592	0.82[AMR][1000 genomes]
rs10051888	0.89[AMR][1000 genomes]
rs10054615	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10054948	0.89[AMR][1000 genomes]
rs10056708	0.89[AMR][1000 genomes]
rs10059679	0.87[AMR][1000 genomes]
rs10066847	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10072128	0.89[AMR][1000 genomes]
rs10076486	0.80[AMR][1000 genomes]
rs10076663	0.89[AMR][1000 genomes]
rs10077786	0.89[AMR][1000 genomes]
rs10078706	0.87[AMR][1000 genomes]
rs10079875	0.89[AMR][1000 genomes]
rs10080165	0.89[AMR][1000 genomes]
rs10472342	0.87[AMR][1000 genomes]
rs10472344	0.89[AMR][1000 genomes]
rs10473219	0.89[AMR][1000 genomes]
rs10473220	0.89[AMR][1000 genomes]
rs11748194	0.89[AMR][1000 genomes]
rs12657195	0.82[AMR][1000 genomes]
rs12659571	0.80[AMR][1000 genomes]
rs13360188	0.89[AMR][1000 genomes]
rs1393155	0.89[AMR][1000 genomes]
rs1393156	0.90[AMR][1000 genomes]
rs1645519	0.83[AMR][1000 genomes]
rs1697939	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1697940	0.89[AMR][1000 genomes]
rs1697941	0.86[AMR][1000 genomes]
rs1697942	0.86[AMR][1000 genomes]
rs1827363	0.89[AMR][1000 genomes]
rs1827366	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1827367	0.83[AMR][1000 genomes]
rs188932	0.80[AMR][1000 genomes]
rs2329430	0.82[AMR][1000 genomes]
rs2432155	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2876848	0.82[AMR][1000 genomes]
rs28770573	0.82[AMR][1000 genomes]
rs28834109	0.82[AMR][1000 genomes]
rs323558	0.82[AMR][1000 genomes]
rs373411	0.86[AMR][1000 genomes]
rs4277953	0.83[AMR][1000 genomes]
rs4277954	0.82[AMR][1000 genomes]
rs4461680	0.82[AMR][1000 genomes]
rs4559041	0.82[AMR][1000 genomes]
rs567165	0.83[AMR][1000 genomes]
rs619491	0.89[AMR][1000 genomes]
rs7445411	0.89[AMR][1000 genomes]
rs7701643	0.80[AMR][1000 genomes]
rs7701871	0.82[AMR][1000 genomes]
rs7706776	0.82[AMR][1000 genomes]
rs7711745	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7717388	0.89[AMR][1000 genomes]
rs7717391	0.89[AMR][1000 genomes]
rs7717457	0.89[AMR][1000 genomes]
rs7717794	0.82[AMR][1000 genomes]
rs7721703	0.82[AMR][1000 genomes]
rs7731772	0.89[AMR][1000 genomes]
rs7731944	0.89[AMR][1000 genomes]
rs7733440	0.89[AMR][1000 genomes]
rs9292788	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9292790	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9292795	0.82[AMR][1000 genomes]
rs9885543	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880438	chr5:40753877-40900717	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases
2	nsv881467	chr5:40869802-41008650	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2757114	chr5:40874078-41009282	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2759341	chr5:40874078-41009282	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv823055	chr5:40875708-41004839	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv35077	chr5:40875843-41000671	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40885200-40895400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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