Variant report

Variant	rs7733073
Chromosome Location	chr5:124383385-124383386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13156954	0.82[AFR][1000 genomes]
rs4274974	0.91[AMR][1000 genomes]
rs4371751	0.84[AMR][1000 genomes]
rs57626669	1.00[AMR][1000 genomes]
rs58315443	0.91[AMR][1000 genomes]
rs58895107	0.81[AMR][1000 genomes]
rs59363686	0.84[AMR][1000 genomes]
rs59429060	0.84[AMR][1000 genomes]
rs60274458	0.91[AMR][1000 genomes]
rs60664342	1.00[AMR][1000 genomes]
rs73301682	0.81[AMR][1000 genomes]
rs73301689	0.81[AMR][1000 genomes]
rs73308764	0.91[AMR][1000 genomes]
rs73784250	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4984	chr5:124377028-124401500	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124378000-124385600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:124378200-124384200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:124379000-124388200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:124380000-124385600	Weak transcription	Stomach Mucosa	stomach
5	chr5:124380400-124384200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:124380400-124384800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:124380400-124385200	Weak transcription	Brain Anterior Caudate	brain
8	chr5:124380600-124385000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:124380600-124388400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:124380800-124385000	Weak transcription	Osteobl	bone
11	chr5:124381200-124383600	Weak transcription	Fetal Kidney	kidney
12	chr5:124381800-124388600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:124382200-124384000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:124382200-124385400	Weak transcription	NH-A	brain
15	chr5:124382200-124385600	Weak transcription	A549	lung
16	chr5:124382800-124388400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:124382800-124394200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:124382800-124394200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:124383000-124389400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links