Variant report

Variant	rs77334030
Chromosome Location	chr8:52873650-52873651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52870845..52873668-chr8:52875256..52877463,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1031672	chr8:52872448-52917469	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52867000-52873800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:52870200-52874200	Weak transcription	Fetal Brain Male	brain
3	chr8:52870800-52873800	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:52871000-52874400	Weak transcription	HMEC	breast
5	chr8:52871200-52875000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:52871400-52873800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:52871400-52873800	Weak transcription	Pancreas	Pancrea
8	chr8:52871400-52874200	Weak transcription	Placenta	Placenta
9	chr8:52871400-52874400	Weak transcription	Fetal Intestine Small	intestine
10	chr8:52872600-52874200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:52872600-52874200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:52872800-52873800	Weak transcription	Psoas Muscle	Psoas
13	chr8:52872800-52874200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:52873000-52874600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:52873200-52873800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr8:52873200-52875600	Flanking Active TSS	Dnd41	blood
17	chr8:52873400-52874400	Enhancers	Primary B cells from peripheral blood	blood
18	chr8:52873600-52873800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr8:52873600-52873800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr8:52873600-52874200	Enhancers	Primary T cells from cord blood	blood
21	chr8:52873600-52874200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:52873600-52874200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr8:52873600-52874400	Enhancers	Primary B cells from cord blood	blood
24	chr8:52873600-52874400	Enhancers	Primary T cells fromperipheralblood	blood
25	chr8:52873600-52874400	Enhancers	Primary hematopoietic stem cells	blood
26	chr8:52873600-52874400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr8:52873600-52874400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr8:52873600-52874400	Enhancers	Fetal Thymus	thymus
29	chr8:52873600-52874400	Enhancers	Spleen	Spleen
30	chr8:52873600-52874600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr8:52873600-52874800	Flanking Active TSS	GM12878-XiMat	blood

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