Variant report

Variant	rs7733431
Chromosome Location	chr5:113013834-113013835
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1864062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1864063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1864064	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28473370	0.81[EUR][1000 genomes]
rs60787235	0.81[EUR][1000 genomes]
rs61207319	0.81[EUR][1000 genomes]
rs61679898	0.81[EUR][1000 genomes]
rs6869160	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7705632	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113011200-113014200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:113011200-113015000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:113011400-113014200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:113011400-113014400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:113011400-113014800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:113012600-113018400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:113013200-113015400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:113013400-113014600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:113013600-113014000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:113013600-113014600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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