Variant report

Variant	rs7733628
Chromosome Location	chr5:114684506-114684507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:114674153..114676680-chr5:114683585..114685704,2	K562	blood:
2	chr5:114673326..114675694-chr5:114682401..114684527,2	MCF-7	breast:
3	chr5:114684315..114686804-chr5:114699761..114703151,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55784782	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114679000-114685200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:114679000-114685400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:114679000-114686000	Weak transcription	Pancreas	Pancrea
4	chr5:114680000-114684800	Weak transcription	NHLF	lung
5	chr5:114680200-114684600	Weak transcription	Hela-S3	cervix
6	chr5:114680200-114684600	Weak transcription	Osteobl	bone
7	chr5:114680400-114684800	Weak transcription	NHDF-Ad	bronchial
8	chr5:114683600-114685600	Enhancers	Stomach Mucosa	stomach
9	chr5:114683600-114685800	Enhancers	Duodenum Mucosa	Duodenum
10	chr5:114683800-114685400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:114683800-114685600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:114684000-114684800	Enhancers	Small Intestine	intestine
13	chr5:114684000-114685000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:114684000-114686000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr5:114684000-114686000	Enhancers	HepG2	liver
16	chr5:114684000-114686200	Enhancers	Fetal Intestine Small	intestine
17	chr5:114684000-114686200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr5:114684200-114684800	Enhancers	A549	lung
19	chr5:114684200-114685800	Enhancers	Liver	Liver
20	chr5:114684400-114685000	Enhancers	Ovary	ovary
21	chr5:114684400-114685800	Enhancers	HUVEC	blood vessel
22	chr5:114684400-114685800	Enhancers	NH-A	brain
23	chr5:114684400-114686000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:114684400-114686000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:114684400-114686000	Enhancers	Fetal Intestine Large	intestine
26	chr5:114684400-114686200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr5:114684400-114688000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links