Variant report

Variant	rs7733863
Chromosome Location	chr5:112323611-112323612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112312174..112316217-chr5:112322371..112325036,3	K562	blood:

Variant related genes	Relation type
ENSG00000172795	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1549182	0.82[ASN][1000 genomes]
rs2112454	0.88[ASN][1000 genomes]
rs33544	0.86[ASN][1000 genomes]
rs33545	0.86[ASN][1000 genomes]
rs33548	0.86[ASN][1000 genomes]
rs4705529	0.82[ASN][1000 genomes]
rs9784647	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv599394	chr5:112185491-112446323	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1019756	chr5:112242315-112325943	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1028759	chr5:112300490-112358514	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7733863	DCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112313200-112329000	Weak transcription	Spleen	Spleen
2	chr5:112313800-112337600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:112314000-112329000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:112314000-112335400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:112314000-112337200	Weak transcription	Lung	lung
6	chr5:112314000-112338200	Weak transcription	Gastric	stomach
7	chr5:112314200-112326800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:112314200-112328800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:112314200-112328800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:112314200-112332000	Weak transcription	Fetal Kidney	kidney
11	chr5:112314200-112332000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:112314200-112337000	Weak transcription	HSMMtube	muscle
13	chr5:112314200-112338200	Weak transcription	Aorta	Aorta
14	chr5:112314200-112341000	Weak transcription	Small Intestine	intestine
15	chr5:112314200-112349600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:112314200-112356800	Weak transcription	Stomach Mucosa	stomach
17	chr5:112314200-112362600	Weak transcription	Colonic Mucosa	Colon
18	chr5:112314400-112338400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:112314800-112324400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr5:112314800-112324400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr5:112314800-112325800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:112314800-112332000	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:112314800-112332000	Weak transcription	NHLF	lung
24	chr5:112314800-112332200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:112314800-112337200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr5:112314800-112349200	Weak transcription	Brain Substantia Nigra	brain
27	chr5:112315400-112330800	Weak transcription	Brain Anterior Caudate	brain
28	chr5:112315600-112328600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr5:112315600-112332000	Weak transcription	NHDF-Ad	bronchial
30	chr5:112315600-112332200	Weak transcription	Ovary	ovary
31	chr5:112315600-112339400	Weak transcription	Hela-S3	cervix
32	chr5:112315600-112362600	Weak transcription	Brain Angular Gyrus	brain
33	chr5:112315800-112329200	Weak transcription	Colon Smooth Muscle	Colon
34	chr5:112315800-112334600	Weak transcription	Brain Germinal Matrix	brain
35	chr5:112316000-112332200	Weak transcription	Fetal Brain Female	brain
36	chr5:112316000-112337000	Weak transcription	A549	lung
37	chr5:112316200-112324600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr5:112316400-112324200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:112316400-112330000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr5:112316600-112326600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr5:112316600-112330000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:112316800-112326200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr5:112317000-112332000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr5:112317000-112338200	Weak transcription	Left Ventricle	heart
45	chr5:112317800-112328400	Weak transcription	Osteobl	bone
46	chr5:112317800-112366200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:112318000-112329600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr5:112318000-112336400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr5:112318400-112329000	Weak transcription	NHEK	skin
50	chr5:112318400-112365600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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