Variant report
| Variant | rs773389 |
|---|---|
| Chromosome Location | chr7:39976577-39976578 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:39975051..39978175-chr7:39986837..39989689,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000259826 | Chromatin interaction |
| ENSG00000065883 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1314087 | 1.00[YRI][hapmap] |
| rs1533943 | 1.00[AFR][1000 genomes] |
| rs1798989 | 1.00[AMR][1000 genomes] |
| rs1798990 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4723917 | 1.00[AFR][1000 genomes] |
| rs6462954 | 1.00[AFR][1000 genomes] |
| rs773390 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs773392 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs773404 | 1.00[YRI][hapmap] |
| rs773406 | 1.00[YRI][hapmap] |
| rs773408 | 1.00[YRI][hapmap] |
| rs773409 | 1.00[YRI][hapmap] |
| rs773421 | 1.00[YRI][hapmap] |
| rs773422 | 1.00[YRI][hapmap] |
| rs773423 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv887973 | chr7:39772654-40110720 | Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 58 gene(s) | inside rSNPs | diseases |
| 2 | nsv887975 | chr7:39858378-40124137 | Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
| 3 | nsv887976 | chr7:39874986-40018693 | Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 47 gene(s) | inside rSNPs | diseases |
| 4 | nsv887977 | chr7:39885541-40018693 | ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:39976400-39976800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
