Variant report

Variant	rs773407
Chromosome Location	chr7:40058114-40058115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1146042	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1267263	0.83[EUR][1000 genomes]
rs17496102	0.95[ASN][1000 genomes]
rs1798988	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2329694	1.00[CEU][hapmap]
rs3930486	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs6950489	1.00[CEU][hapmap]
rs695078	0.83[EUR][1000 genomes]
rs6966734	1.00[CEU][hapmap]
rs699513	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs798852	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs798854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs798857	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs798863	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv1015322	chr7:40006195-40141195	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2761319	chr7:40006195-40142139	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv464436	chr7:40018693-40133044	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv606706	chr7:40018693-40133044	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv606707	chr7:40021044-40133044	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv606708	chr7:40021044-40157040	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv887978	chr7:40030488-40124137	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3477195	chr7:40051548-40063888	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3477196	chr7:40051548-40063888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv13285	chr7:40051874-40063660	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv429748	chr7:40054760-40140660	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40020400-40077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:40025800-40059600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:40025800-40062800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:40025800-40082200	Weak transcription	Spleen	Spleen
5	chr7:40026000-40071200	Weak transcription	Brain Germinal Matrix	brain
6	chr7:40026600-40096800	Weak transcription	Right Ventricle	heart
7	chr7:40028000-40077800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:40028000-40127800	Weak transcription	Colonic Mucosa	Colon
9	chr7:40028200-40073000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:40034400-40072200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:40042800-40070400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:40043000-40061600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:40043600-40059800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:40043600-40067000	Weak transcription	K562	blood
15	chr7:40043600-40071600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:40043600-40076000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:40043600-40079800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr7:40043600-40095200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:40043600-40127800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:40044400-40096000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:40047600-40102600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:40048000-40102400	Weak transcription	HMEC	breast
23	chr7:40048000-40102400	Weak transcription	NHEK	skin
24	chr7:40048200-40058400	Weak transcription	Hela-S3	cervix
25	chr7:40048200-40059200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:40048400-40066600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:40048600-40074800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:40049000-40085600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:40049000-40085800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:40049000-40096200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr7:40049200-40074800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:40050000-40075400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr7:40050200-40059400	Weak transcription	Thymus	Thymus
34	chr7:40050400-40075000	Weak transcription	Esophagus	oesophagus
35	chr7:40051000-40059000	Weak transcription	Fetal Stomach	stomach
36	chr7:40051000-40059400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr7:40051000-40071200	Weak transcription	Lung	lung
38	chr7:40051400-40058200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:40052000-40066400	Weak transcription	NH-A	brain
40	chr7:40052400-40062600	Weak transcription	Fetal Intestine Small	intestine
41	chr7:40053200-40065400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr7:40054400-40070800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:40054800-40059600	Strong transcription	Dnd41	blood
44	chr7:40055600-40064400	Weak transcription	Small Intestine	intestine
45	chr7:40055600-40126400	Weak transcription	Aorta	Aorta
46	chr7:40055800-40058200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:40055800-40062800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr7:40055800-40070800	Weak transcription	Fetal Brain Female	brain
49	chr7:40055800-40070800	Weak transcription	Pancreas	Pancrea
50	chr7:40055800-40072000	Weak transcription	Stomach Mucosa	stomach

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