Variant report

Variant	rs7734558
Chromosome Location	chr5:35114611-35114612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11740440	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17248083	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2217286	1.00[JPT][hapmap]
rs2962094	0.88[CEU][hapmap]
rs34878627	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35614689	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62355484	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62355490	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7705243	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35105600-35115400	Weak transcription	HepG2	liver
2	chr5:35112800-35129800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:35113800-35118000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr5:35113800-35118400	Strong transcription	Fetal Intestine Small	intestine
5	chr5:35113800-35124000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:35114000-35115200	Strong transcription	Liver	Liver
7	chr5:35114000-35116800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:35114000-35118200	Strong transcription	Fetal Intestine Large	intestine
9	chr5:35114000-35118200	Strong transcription	Placenta	Placenta
10	chr5:35114200-35120800	Weak transcription	Fetal Kidney	kidney
11	chr5:35114600-35115200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:35114600-35116200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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