Variant report

Variant	rs7735071
Chromosome Location	chr5:79665297-79665298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10056190	1.00[JPT][hapmap]
rs10062770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942920	1.00[JPT][hapmap]
rs12654082	1.00[JPT][hapmap]
rs1500138	1.00[JPT][hapmap]
rs1862136	1.00[JPT][hapmap]
rs2216548	1.00[JPT][hapmap]
rs6453514	1.00[JPT][hapmap]
rs6859753	1.00[JPT][hapmap]
rs6896247	0.93[ASN][1000 genomes]
rs7709366	0.97[ASN][1000 genomes]
rs7718110	1.00[JPT][hapmap]
rs7720696	1.00[JPT][hapmap]
rs7722090	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv328596	chr5:79662132-79670063	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79663400-79667000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:79664400-79665400	Enhancers	Brain Substantia Nigra	brain
3	chr5:79664600-79665400	Enhancers	Brain Anterior Caudate	brain
4	chr5:79664600-79665600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:79664800-79665800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr5:79664800-79666000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:79664800-79666400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:79664800-79666800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:79664800-79667000	Enhancers	Brain Angular Gyrus	brain
10	chr5:79665000-79665800	Enhancers	Fetal Brain Female	brain
11	chr5:79665000-79666600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:79665000-79667000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:79665200-79665400	Enhancers	Brain Hippocampus Middle	brain
14	chr5:79665200-79665400	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr5:79665200-79665400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr5:79665200-79665600	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr5:79665200-79666800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr5:79665200-79666800	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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