Variant report

Variant	rs773570
Chromosome Location	chr1:113819341-113819342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:113793821..113796306-chr1:113817714..113819424,2	K562	blood:
2	chr1:113810016..113812073-chr1:113817406..113820009,2	K562	blood:
3	chr1:113816895..113819833-chr1:113821409..113824351,2	MCF-7	breast:
4	chr1:113818644..113821227-chr1:113821318..113823350,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1216900	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18293	chr1:113375437-113852815	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1007045	chr1:113425222-113839910	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv427719	chr1:113570229-114078388	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113799400-113824200	Weak transcription	Fetal Kidney	kidney
2	chr1:113814600-113822600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:113814800-113822000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:113814800-113822400	Weak transcription	Fetal Intestine Large	intestine
5	chr1:113815800-113823800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:113817600-113820200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:113817800-113819400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:113817800-113820200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:113817800-113820200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:113818000-113819600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:113818000-113820200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:113818000-113820200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:113818000-113820200	Enhancers	K562	blood
14	chr1:113818200-113820200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr1:113818600-113819800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:113818600-113819800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:113818600-113820000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:113818600-113822000	Weak transcription	Stomach Mucosa	stomach
19	chr1:113818800-113820200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr1:113819200-113819400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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