Variant report

Variant	rs773574
Chromosome Location	chr1:113817780-113817781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1088716	0.94[ASN][1000 genomes]
rs1418605	0.89[ASN][1000 genomes]
rs2763874	0.94[ASN][1000 genomes]
rs6656612	1.00[CHB][hapmap]
rs6696679	1.00[CHB][hapmap]
rs773572	0.89[ASN][1000 genomes]
rs773573	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs773598	0.83[ASN][1000 genomes]
rs773599	0.83[ASN][1000 genomes]
rs773600	0.83[ASN][1000 genomes]
rs773602	0.83[ASN][1000 genomes]
rs773604	0.83[ASN][1000 genomes]
rs773605	0.83[ASN][1000 genomes]
rs773607	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs773608	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs773609	0.94[ASN][1000 genomes]
rs773610	0.94[ASN][1000 genomes]
rs773614	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs796471	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18293	chr1:113375437-113852815	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1007045	chr1:113425222-113839910	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv427719	chr1:113570229-114078388	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113798800-113817800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:113799400-113824200	Weak transcription	Fetal Kidney	kidney
3	chr1:113814600-113822600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:113814800-113822000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:113814800-113822400	Weak transcription	Fetal Intestine Large	intestine
6	chr1:113815800-113823800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:113817600-113818200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:113817600-113820200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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