Variant report

Variant	rs77358000
Chromosome Location	chr2:9923573-9923574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9916325..9919455-chr2:9921227..9924824,4	MCF-7	breast:
2	chr2:9921109..9926354-chr2:9930407..9935197,5	K562	blood:
3	chr2:9920939..9923701-chr2:9941195..9943026,2	MCF-7	breast:
4	chr2:9694755..9696304-chr2:9923143..9926045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271855	Chromatin interaction
ENSG00000151694	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1003026	chr2:9854939-10012516	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv470443	chr2:9857018-9975557	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv873619	chr2:9870631-9956981	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1013969	chr2:9888703-10023951	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv873620	chr2:9906145-9951970	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv524327	chr2:9913515-9954768	Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv948591	chr2:9922257-10141191	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
10	nsv580931	chr2:9922283-9927532	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv3486179	chr2:9922334-9929480	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	esv3460092	chr2:9923501-9927899	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9915000-9924800	Weak transcription	Left Ventricle	heart
2	chr2:9917800-9923600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:9918200-9924000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:9918600-9923600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr2:9919400-9927000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:9920200-9924000	Enhancers	Primary T cells from cord blood	blood
7	chr2:9920600-9924200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:9922000-9923600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr2:9922000-9923600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr2:9922200-9923600	Enhancers	Fetal Thymus	thymus
11	chr2:9922600-9927200	Weak transcription	GM12878-XiMat	blood
12	chr2:9923000-9923600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr2:9923000-9923600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr2:9923000-9924200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:9923000-9927000	Weak transcription	Fetal Kidney	kidney
16	chr2:9923200-9924000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr2:9923200-9927000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:9923200-9927000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:9923200-9927000	Weak transcription	Adipose Nuclei	Adipose
20	chr2:9923400-9924400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:9923400-9924400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr2:9923400-9925600	Weak transcription	Fetal Intestine Large	intestine
23	chr2:9923400-9926000	Weak transcription	Fetal Intestine Small	intestine
24	chr2:9923400-9926200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr2:9923400-9926200	Weak transcription	Placenta	Placenta

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