Variant report

Variant	rs7735810
Chromosome Location	chr5:95112656-95112657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:95112385-95112740	K562	blood:	n/a	n/a
2	POLR2A	chr5:95101625-95118213	K562	blood:	n/a	n/a
3	POLR2A	chr5:95111953-95118472	MCF-7	breast:	n/a	n/a
4	POLR2A	chr5:95112207-95112904	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:95093048..95095868-chr5:95111822..95113973,2	K562	blood:
2	chr5:95101951..95104045-chr5:95112429..95115464,3	K562	blood:
3	chr5:95084074..95086159-chr5:95111121..95113183,2	K562	blood:
4	chr5:95111585..95113200-chr5:95117573..95120269,2	K562	blood:
5	chr5:94999958..95001957-chr5:95110842..95112813,2	MCF-7	breast:

No data

Variant related genes	Relation type
RHOBTB3	TF binding region
ENSG00000164292	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10476656	1.00[AMR][1000 genomes]
rs11952481	1.00[AMR][1000 genomes]
rs11959785	1.00[AMR][1000 genomes]
rs59723543	1.00[AMR][1000 genomes]
rs7723251	1.00[AMR][1000 genomes]
rs9314151	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95072800-95133400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:95083200-95122000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:95087800-95134000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:95095000-95115000	Weak transcription	Gastric	stomach
5	chr5:95096400-95125400	Weak transcription	Small Intestine	intestine
6	chr5:95096600-95117000	Weak transcription	Brain Angular Gyrus	brain
7	chr5:95096600-95129800	Weak transcription	Colonic Mucosa	Colon
8	chr5:95096800-95115000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:95097800-95115000	Weak transcription	Spleen	Spleen
10	chr5:95098200-95114400	Weak transcription	Lung	lung
11	chr5:95102200-95114800	Weak transcription	Brain Substantia Nigra	brain
12	chr5:95104800-95114600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:95105000-95115000	Weak transcription	Aorta	Aorta
14	chr5:95105000-95131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:95105400-95116200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:95105400-95116400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:95105600-95116600	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:95105600-95119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:95105600-95119800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:95105800-95119400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:95105800-95119400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:95105800-95119600	Weak transcription	Brain Germinal Matrix	brain
23	chr5:95105800-95122200	Weak transcription	Fetal Brain Female	brain
24	chr5:95106400-95127400	Weak transcription	Fetal Brain Male	brain
25	chr5:95107200-95122400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr5:95107400-95117000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr5:95107400-95117000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:95107600-95117000	Weak transcription	Fetal Kidney	kidney
29	chr5:95108000-95115800	Weak transcription	Liver	Liver
30	chr5:95108600-95114600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:95109200-95113600	Weak transcription	Right Atrium	heart
32	chr5:95109200-95114400	Weak transcription	Ovary	ovary
33	chr5:95109400-95114400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:95109400-95114400	Weak transcription	Pancreas	Pancrea
35	chr5:95109600-95113400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr5:95109600-95113400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr5:95109600-95114400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr5:95109600-95114400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:95109600-95114400	Weak transcription	NHLF	lung
40	chr5:95109600-95114600	Weak transcription	Fetal Thymus	thymus
41	chr5:95109600-95114600	Weak transcription	Left Ventricle	heart
42	chr5:95109600-95114600	Weak transcription	HSMMtube	muscle
43	chr5:95109600-95114800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr5:95109600-95114800	Weak transcription	Right Ventricle	heart
45	chr5:95109600-95115400	Weak transcription	Adipose Nuclei	Adipose
46	chr5:95109600-95115800	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:95109600-95116000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:95109600-95116600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr5:95109600-95116600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr5:95109600-95116600	Weak transcription	Dnd41	blood

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