Variant report

Variant	rs7736186
Chromosome Location	chr5:58270494-58270495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10514870	1.00[AFR][1000 genomes]
rs1498603	1.00[AFR][1000 genomes]
rs17776879	1.00[AFR][1000 genomes]
rs62356693	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58262400-58273400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:58263200-58271400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr5:58265600-58276600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:58265800-58276200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:58266000-58287600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:58266800-58281200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:58267400-58273000	Strong transcription	Hela-S3	cervix
8	chr5:58267600-58280000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:58267600-58282600	Strong transcription	Primary T cells from cord blood	blood
10	chr5:58267800-58276000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:58268000-58273800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:58268000-58278000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:58268000-58281800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:58268000-58288400	Weak transcription	Stomach Mucosa	stomach
15	chr5:58268200-58271000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:58268200-58280400	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr5:58268200-58287200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:58268400-58274000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr5:58268400-58275400	Strong transcription	Fetal Thymus	thymus
20	chr5:58268400-58287400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:58268400-58294400	Weak transcription	NH-A	brain
22	chr5:58268600-58272000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:58268600-58272600	Weak transcription	NHDF-Ad	bronchial
24	chr5:58268600-58275600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:58268600-58279400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:58268600-58279600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:58268800-58270800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr5:58268800-58272800	Strong transcription	HUVEC	blood vessel
29	chr5:58268800-58273400	Strong transcription	Fetal Intestine Large	intestine
30	chr5:58268800-58273400	Strong transcription	Right Ventricle	heart
31	chr5:58268800-58274000	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr5:58268800-58275800	Strong transcription	HSMM	muscle
33	chr5:58268800-58280000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr5:58268800-58280200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr5:58268800-58286000	Weak transcription	HepG2	liver
36	chr5:58268800-58286600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:58268800-58286800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr5:58268800-58287200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr5:58268800-58287800	Weak transcription	Placenta	Placenta
40	chr5:58268800-58288800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:58268800-58294600	Weak transcription	Brain Hippocampus Middle	brain
42	chr5:58269000-58272000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:58269000-58273200	Strong transcription	Fetal Lung	lung
44	chr5:58269000-58273200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr5:58269000-58273600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:58269000-58273800	Strong transcription	Colon Smooth Muscle	Colon
47	chr5:58269000-58274000	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr5:58269000-58274000	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr5:58269000-58274000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr5:58269000-58279400	Strong transcription	Primary hematopoietic stem cells	blood

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