Variant report

Variant	rs7736477
Chromosome Location	chr5:43842172-43842173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13187446	0.87[AFR][1000 genomes]
rs35388758	0.86[AFR][1000 genomes]
rs35672591	0.88[AFR][1000 genomes]
rs4403180	0.89[AFR][1000 genomes]
rs6892300	0.87[AFR][1000 genomes]
rs6897045	0.86[EUR][1000 genomes]
rs7703953	0.85[TSI][hapmap]
rs7713401	0.92[EUR][1000 genomes]
rs7723677	0.82[CEU][hapmap]
rs7735514	0.92[EUR][1000 genomes]
rs7735703	0.92[EUR][1000 genomes]
rs7736120	0.92[EUR][1000 genomes]
rs9918185	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7736477	NNT	Cis_1M	lymphoblastoid	RTeQTL
rs7736477	NNT	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43839600-43842200	Enhancers	Fetal Lung	lung
2	chr5:43840600-43842200	Enhancers	Fetal Stomach	stomach
3	chr5:43841000-43845200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:43842000-43844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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