Variant report

Variant	rs77365293
Chromosome Location	chr9:99485907-99485908
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:99483777..99485911-chr9:99496677..99498844,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893605	chr9:99324153-99533434	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040724	chr9:99375726-99500141	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv430084	chr9:99383945-99551945	Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv972428	chr9:99484092-99489705	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv831660	chr9:99485058-99672080	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs77365293	RP11-535M15.1	cis	Artery Tibial	GTEx
rs77365293	RP11-535M15.1	cis	lung	GTEx
rs77365293	RP11-535M15.2	cis	Muscle Skeletal	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99482200-99497200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:99482400-99488800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:99482400-99501000	Weak transcription	Pancreas	Pancrea
4	chr9:99482600-99490600	Weak transcription	Psoas Muscle	Psoas
5	chr9:99482800-99492400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:99482800-99492600	Weak transcription	Brain Angular Gyrus	brain
7	chr9:99482800-99498000	Weak transcription	Ovary	ovary
8	chr9:99482800-99498400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:99482800-99499800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:99483000-99490800	Weak transcription	Gastric	stomach
11	chr9:99483000-99492400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:99483400-99491200	Weak transcription	Fetal Stomach	stomach
13	chr9:99483800-99490400	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:99484600-99487400	Weak transcription	Brain Anterior Caudate	brain
15	chr9:99485000-99491000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:99485200-99487600	Weak transcription	Aorta	Aorta
17	chr9:99485200-99488400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:99485200-99490400	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:99485200-99491200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:99485400-99487800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:99485400-99488600	Weak transcription	Adipose Nuclei	Adipose
22	chr9:99485400-99488600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:99485400-99488800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:99485400-99488800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:99485400-99498000	Weak transcription	Fetal Lung	lung
26	chr9:99485800-99487400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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