Variant report

Variant	rs7736838
Chromosome Location	chr5:177660878-177660879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177659880..177662371-chr5:178030366..178033143,2	K562	blood:
2	chr5:177613072..177615957-chr5:177659065..177661764,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244234	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3749808	0.83[EUR][1000 genomes]
rs58562702	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719352	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
5	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
6	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
7	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv1018031	chr5:177655010-177746378	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv537969	chr5:177655010-177746378	Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
11	nsv883195	chr5:177655194-177690539	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
12	nsv883196	chr5:177655194-177690978	Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv883197	chr5:177655194-177707204	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
14	nsv1025291	chr5:177657927-177756215	Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
15	nsv537970	chr5:177657927-177756215	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
16	esv3441517	chr5:177658571-177661119	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv527792	chr5:177659075-177675217	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
18	nsv883198	chr5:177659075-177690539	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177659800-177665800	Weak transcription	Gastric	stomach
2	chr5:177660000-177661400	Weak transcription	HMEC	breast
3	chr5:177660000-177663400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:177660000-177663800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:177660000-177664600	Weak transcription	Small Intestine	intestine
6	chr5:177660200-177661400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:177660200-177661400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:177660200-177661600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:177660200-177661600	Weak transcription	Colonic Mucosa	Colon
10	chr5:177660200-177661600	Weak transcription	Fetal Heart	heart
11	chr5:177660200-177661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:177660200-177661800	Weak transcription	Primary B cells from cord blood	blood
13	chr5:177660200-177661800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:177660200-177662000	Weak transcription	Pancreas	Pancrea
15	chr5:177660200-177662200	Enhancers	Placenta	Placenta
16	chr5:177660200-177662400	Weak transcription	Lung	lung
17	chr5:177660200-177662600	Enhancers	Fetal Thymus	thymus
18	chr5:177660200-177663400	Weak transcription	Right Atrium	heart
19	chr5:177660200-177663400	Weak transcription	Right Ventricle	heart
20	chr5:177660200-177664600	Weak transcription	HSMM	muscle
21	chr5:177660200-177665200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:177660200-177665800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr5:177660200-177667000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr5:177660200-177667000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:177660200-177667600	Enhancers	Fetal Muscle Trunk	muscle
26	chr5:177660400-177661400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:177660400-177661400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr5:177660400-177661400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr5:177660400-177661400	Weak transcription	Adipose Nuclei	Adipose
30	chr5:177660400-177661400	Weak transcription	Stomach Mucosa	stomach
31	chr5:177660400-177661400	Weak transcription	GM12878-XiMat	blood
32	chr5:177660400-177661400	Weak transcription	NHDF-Ad	bronchial
33	chr5:177660400-177661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr5:177660400-177661600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr5:177660400-177661800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:177660400-177661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr5:177660400-177661800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr5:177660400-177661800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr5:177660400-177661800	Weak transcription	Primary T cells from cord blood	blood
40	chr5:177660400-177661800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr5:177660400-177661800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr5:177660400-177661800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr5:177660400-177661800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr5:177660400-177661800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:177660400-177661800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr5:177660400-177661800	Weak transcription	Liver	Liver
47	chr5:177660400-177661800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr5:177660400-177661800	Weak transcription	Fetal Intestine Large	intestine
49	chr5:177660400-177661800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr5:177660400-177661800	Weak transcription	Thymus	Thymus

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