Variant report

Variant	rs7736891
Chromosome Location	chr5:52808873-52808874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10041126	0.91[EUR][1000 genomes]
rs10042485	0.87[ASN][1000 genomes]
rs10050519	0.86[ASN][1000 genomes]
rs10050522	0.86[ASN][1000 genomes]
rs10940327	0.83[CHB][hapmap]
rs11739076	0.94[ASN][1000 genomes]
rs11742590	0.96[ASN][1000 genomes]
rs11749138	0.84[CHB][hapmap]
rs11951062	0.96[ASN][1000 genomes]
rs12517465	0.83[CHB][hapmap]
rs13158446	0.96[ASN][1000 genomes]
rs1345811	0.95[ASN][1000 genomes]
rs1363965	0.95[ASN][1000 genomes]
rs1363973	0.95[ASN][1000 genomes]
rs1423562	0.97[ASN][1000 genomes]
rs1593051	0.88[ASN][1000 genomes]
rs1593052	0.88[ASN][1000 genomes]
rs1593055	0.96[ASN][1000 genomes]
rs1833887	0.96[ASN][1000 genomes]
rs2087618	0.84[CHB][hapmap]
rs2124948	0.83[CHB][hapmap]
rs2168662	0.89[CHB][hapmap]
rs2216718	0.96[ASN][1000 genomes]
rs2290697	0.83[CHB][hapmap]
rs4362905	0.83[CHB][hapmap]
rs6450141	0.95[ASN][1000 genomes]
rs6450144	0.87[ASN][1000 genomes]
rs6450145	0.83[ASN][1000 genomes]
rs6450147	0.87[ASN][1000 genomes]
rs6450148	0.86[ASN][1000 genomes]
rs6450150	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs6450151	0.89[CHB][hapmap]
rs6864802	0.83[ASN][1000 genomes]
rs6872463	0.88[ASN][1000 genomes]
rs6882567	0.87[ASN][1000 genomes]
rs6886576	0.85[ASN][1000 genomes]
rs6897299	0.84[CHB][hapmap]
rs7703235	0.96[ASN][1000 genomes]
rs7706455	0.96[ASN][1000 genomes]
rs7707608	0.96[ASN][1000 genomes]
rs7707821	0.91[EUR][1000 genomes]
rs7709405	0.94[ASN][1000 genomes]
rs7723495	0.89[CHB][hapmap]
rs7731038	0.87[ASN][1000 genomes]
rs7737214	0.96[ASN][1000 genomes]
rs7737530	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1032632	chr5:52667145-53655624	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv880868	chr5:52799618-53002783	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52808200-52809200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:52808200-52809200	Enhancers	HMEC	breast
3	chr5:52808400-52809000	Enhancers	NHEK	skin
4	chr5:52808400-52809200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:52808400-52809200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:52808400-52809200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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