Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39410899..39413477-chr6:39419818..39422781,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10214466	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10214720	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549608	1.00[ASN][1000 genomes]
rs56682211	1.00[ASN][1000 genomes]
rs57000749	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57013484	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57077164	0.88[ASN][1000 genomes]
rs57310726	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57697326	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57924933	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58720104	1.00[ASN][1000 genomes]
rs61342855	1.00[ASN][1000 genomes]
rs62402247	1.00[ASN][1000 genomes]
rs62402248	1.00[ASN][1000 genomes]
rs62402249	1.00[ASN][1000 genomes]
rs62402255	0.94[ASN][1000 genomes]
rs62403274	1.00[ASN][1000 genomes]
rs62403275	1.00[ASN][1000 genomes]
rs62403281	0.88[ASN][1000 genomes]
rs73412749	1.00[ASN][1000 genomes]
rs875730	1.00[ASN][1000 genomes]
rs9471117	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39422400-39422800	Active TSS	HUES6 Cell Line	embryonic stem cell

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