Variant report

Variant	rs7738323
Chromosome Location	chr6:72126326-72126327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1727638	0.86[EUR][1000 genomes]
rs852964	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs875841	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
3	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
4	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
5	chr6:72116200-72128600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:72117600-72128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:72118200-72127800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:72120000-72129000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:72120200-72126600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:72120200-72126600	Weak transcription	Lung	lung
11	chr6:72122400-72127400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:72122400-72128800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:72122600-72126800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:72122600-72126800	Weak transcription	Spleen	Spleen
15	chr6:72122600-72127400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:72122600-72128200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:72122600-72128800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:72122600-72129000	Weak transcription	Gastric	stomach
19	chr6:72123400-72128600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:72123600-72127200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:72124200-72127000	Strong transcription	NHDF-Ad	bronchial
22	chr6:72124200-72127200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:72124200-72127200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:72124400-72127200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:72124400-72127200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:72124400-72127200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:72124400-72127200	Strong transcription	Placenta	Placenta
28	chr6:72124600-72126600	Genic enhancers	Fetal Kidney	kidney
29	chr6:72124600-72127200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:72124600-72127200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:72124600-72127200	Strong transcription	Fetal Lung	lung
32	chr6:72124600-72127400	Genic enhancers	HMEC	breast
33	chr6:72124800-72126600	Strong transcription	Left Ventricle	heart
34	chr6:72124800-72126800	Transcr. at gene 5' and 3'	Hela-S3	cervix
35	chr6:72124800-72127000	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:72124800-72127000	Strong transcription	Ovary	ovary
37	chr6:72124800-72127200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:72124800-72127200	Strong transcription	Adipose Nuclei	Adipose
39	chr6:72124800-72127400	Genic enhancers	Brain Anterior Caudate	brain
40	chr6:72124800-72127400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
41	chr6:72125000-72126400	Strong transcription	Brain Hippocampus Middle	brain
42	chr6:72125000-72126400	Genic enhancers	Brain Substantia Nigra	brain
43	chr6:72125000-72127800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr6:72125200-72126400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:72125200-72126400	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:72125200-72126400	Strong transcription	NHLF	lung
47	chr6:72125200-72126800	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr6:72125200-72126800	Strong transcription	Aorta	Aorta
49	chr6:72125200-72126800	Weak transcription	Fetal Heart	heart
50	chr6:72125200-72126800	Strong transcription	Right Ventricle	heart

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