Variant report

Variant	rs7738367
Chromosome Location	chr6:161651368-161651369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161643766..161646646-chr6:161649378..161651893,2	K562	blood:
2	chr6:161646694..161648332-chr6:161648631..161651457,2	MCF-7	breast:
3	chr6:161646998..161649019-chr6:161649045..161652363,4	K562	blood:
4	chr6:161636514..161639270-chr6:161649424..161651598,2	MCF-7	breast:
5	chr6:161650432..161652504-chr6:161681680..161683912,2	K562	blood:
6	chr6:161643850..161652009-chr6:161690298..161699013,9	K562	blood:
7	chr6:161625007..161627754-chr6:161650672..161652327,2	K562	blood:

Variant related genes	Relation type
ENSG00000026652	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3778229	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs3798940	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6455710	0.88[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6455711	0.96[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6455712	0.93[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6941651	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7763278	0.85[CEU][hapmap];0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7738367	AGPAT4	cis	cerebellum	SCAN
rs7738367	C16orf81	trans	cerebellum	SCAN

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161636600-161655000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:161636600-161656000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
6	chr6:161639200-161664400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:161644400-161655000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:161644600-161651800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:161646000-161653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:161647200-161663200	Weak transcription	Thymus	Thymus
11	chr6:161648000-161654000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:161648000-161656800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:161648000-161660600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:161648400-161653800	Strong transcription	Primary B cells from cord blood	blood
15	chr6:161648800-161656800	Weak transcription	Right Ventricle	heart
16	chr6:161649200-161655000	Weak transcription	HMEC	breast
17	chr6:161649400-161651600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:161649400-161651600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:161649400-161657400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:161649400-161662800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:161649600-161693800	Weak transcription	Right Atrium	heart
22	chr6:161649800-161651400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:161649800-161651400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:161649800-161652000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:161650000-161655000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:161650000-161662800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:161650200-161655000	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:161650200-161656800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:161650400-161658000	Enhancers	Brain Substantia Nigra	brain
30	chr6:161650600-161652400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:161650600-161652800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:161650600-161655000	Weak transcription	NHEK	skin
33	chr6:161650800-161651400	Genic enhancers	Primary hematopoietic stem cells	blood
34	chr6:161650800-161651600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:161650800-161652800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:161650800-161653400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:161650800-161653800	Weak transcription	Brain Germinal Matrix	brain
38	chr6:161650800-161653800	Weak transcription	Fetal Heart	heart
39	chr6:161650800-161654200	Weak transcription	Fetal Brain Female	brain
40	chr6:161650800-161655000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:161650800-161655000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:161650800-161655000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:161650800-161655000	Weak transcription	NHLF	lung
44	chr6:161650800-161655200	Weak transcription	Fetal Lung	lung
45	chr6:161651000-161651400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:161651000-161651400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:161651000-161651400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:161651000-161651400	Enhancers	Brain Angular Gyrus	brain
49	chr6:161651000-161651600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:161651000-161651600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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