Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCKS-10	chr6:114374719-114375772	NONHSAT114598

rSNPs within LD-proxies of this variant (count:8)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114361200-114375200	Weak transcription	Aorta	Aorta
2	chr6:114363600-114376600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:114363800-114376400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:114363800-114385000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:114365800-114376400	Weak transcription	Brain Germinal Matrix	brain
6	chr6:114368800-114378600	Weak transcription	Psoas Muscle	Psoas
7	chr6:114370000-114376400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:114370000-114387000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:114370200-114382000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:114370200-114389600	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:114371200-114379000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:114371400-114388200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:114371600-114378600	Weak transcription	HepG2	liver
14	chr6:114372600-114380400	Strong transcription	HSMM	muscle
15	chr6:114372800-114376000	Strong transcription	HSMMtube	muscle
16	chr6:114374600-114375400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:114375000-114375200	Enhancers	Brain Anterior Caudate	brain
18	chr6:114375000-114379400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:114375200-114375400	Enhancers	Aorta	Aorta
20	chr6:114375200-114376400	Weak transcription	Brain Anterior Caudate	brain

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