Variant report

Variant	rs7739857
Chromosome Location	chr6:33515450-33515451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33511493..33513337-chr6:33513833..33516085,2	K562	blood:
2	chr6:33419305..33423714-chr6:33512758..33516549,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213588	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs5745597	1.00[YRI][hapmap]
rs6909769	0.81[AFR][1000 genomes]
rs7739493	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7739507	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7739510	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744691	0.90[AFR][1000 genomes]
rs7752282	0.91[AFR][1000 genomes]
rs7761085	0.93[AFR][1000 genomes]
rs7765464	1.00[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33512000-33516000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:33513200-33515800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:33514000-33519800	Enhancers	Placenta	Placenta
4	chr6:33514600-33516200	Enhancers	Fetal Thymus	thymus
5	chr6:33514600-33516800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:33514800-33516200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:33515000-33515600	Enhancers	K562	blood
8	chr6:33515000-33516600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:33515000-33516600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:33515000-33516800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:33515200-33516600	Enhancers	Primary T cells from cord blood	blood
12	chr6:33515200-33516600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:33515200-33516600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:33515200-33516600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:33515200-33516600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:33515200-33516600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:33515200-33516600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:33515200-33516800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:33515200-33517000	Enhancers	Primary hematopoietic stem cells	blood
20	chr6:33515400-33515600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:33515400-33516000	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:33515400-33516400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:33515400-33516600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:33515400-33516600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:33515400-33516800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:33515400-33517200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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